HTTP Status 500 - java.lang.IllegalStateException: Spring Application context has not been set

Question

Hello.

After upgrading confluence 6.4.x > 6.5 and rebooting the server, we're getting this error  http://intranet.hostko.si:8090/errors.jsp (installation is always made as root and in Linux OS).

Current permissions:

/opt/atlassian/:
total 2.0G
drwxr-xr-x 3 root root 4.0K Jun 5 12:29 .
drwxr-xr-x. 3 root root 4.0K Jan 9 13:40 ..
-rw-r--r-- 1 root root 586M Jan 9 17:53 2018_01_09-confluence-6.0.7-back.zip
-rw-r--r-- 1 root root 827M Jun 5 11:31 2018_06_05-confluence-6.0.7-back.zip
-rw-r--r-- 1 root root 615M Jun 5 12:27 2018_06_05-confluence-6.4.0-back.zip
-rw-r--r-- 1 root root 203 Jun 5 11:28 6.0.7-modifications.txt
-rw-r--r-- 1 root root 203 Jun 5 12:20 6.4.0-modifications.txt
drwxr-xr-x 14 root root 4.0K Jun 5 12:47 confluence

/opt/atlassian/confluence/
drwxr-xr-x 14 root root 4.0K Jun 5 12:47 .
drwxr-xr-x 3 root root 4.0K Jun 5 12:29 ..
drwxr-xr-x 3 root root 4.0K Jun 5 12:29 bin
drwxr-xr-x 3 root root 4.0K Jun 5 12:29 conf
drwxr-xr-x 27 root root 4.0K Jun 5 12:29 confluence
drwxr-xr-x 3 root root 4.0K Jun 5 12:47 .install4j
-rw-r--r-- 1 root root 82K Jun 5 12:47 install.reg
drwxr-xr-x 4 root root 4.0K Jun 5 12:29 jre
drwxr-xr-x 2 root root 4.0K Jun 5 12:29 lib
-rw-r--r-- 1 root root 57K May 1 14:20 LICENSE
drwxr-xr-x 2 root root 68K Jun 5 12:29 licenses
drwx------ 2 confluence root 4.0K Jun 11 05:31 logs
-rw-r--r-- 1 root root 1.5K May 1 14:20 NOTICE
-rw-r--r-- 1 root root 2.3K May 1 14:20 README.html
-rw-r--r-- 1 root root 1.2K May 1 14:20 README.txt
-rw-r--r-- 1 root root 6.9K May 1 14:20 RELEASE-NOTES
-rw-r--r-- 1 root root 17K May 1 14:20 RUNNING.txt
drwxr-xr-x 4 root root 4.0K Jun 5 12:29 synchrony-proxy
drwx------ 3 confluence root 4.0K Jun 5 13:20 temp
-rwx------ 1 root root 11K May 1 14:20 uninstall
drwxr-xr-x 2 root root 4.0K May 1 14:20 webapps
drwx------ 3 confluence root 4.0K Jun 7 14:07 work

How can we fix this problem?

Thank you.

Gorazd

Moses Thomas_08kyb0 · Answer

@hgorazdI don't see  any  error in the logs which  you have provided.

Do not run Confluence as root, and ensure that the user running Confluence has full read and write access to the home folder

You will  need to  give the user "confluence" for instance running confluence  permission to  run this file.

There are many  ways to  do this,  but  i suggest  this.

1.  add user(confluence) to the ownership group

script in mine its here  
opt/atlassian/confluence/bin

enter the command  ls - al ( you will  see the owner group of the file start-confluence.sh)
use the command
sudo usermod -a -G groupname usernamego to where you have the startup confluence

2. then execute the command( recursively giving executable permission including all subfiles)

chmod -R +xr /opt/atlassian/confluence/bin

Best!

hgorazd · Answer

Not yet. I'm still at the same screen and the starting is not showing any serious errors.

Server startup logs are located in /opt/atlassian/confluence/logs/catalina.out
---------------------------------------------------------------------------
Using Java: /opt/atlassian/confluence/jre//bin/java
2018-06-12 08:00:19,666 INFO [main] [atlassian.confluence.bootstrap.SynchronyProxyWatchdog] A Context element for ${confluence.context.path}/synchrony-proxy is found in /opt/atlassian/confluence/conf/server.xml. No further action is required
---------------------------------------------------------------------------
Using CATALINA_BASE: /opt/atlassian/confluence
Using CATALINA_HOME: /opt/atlassian/confluence
Using CATALINA_TMPDIR: /opt/atlassian/confluence/temp
Using JRE_HOME: /opt/atlassian/confluence/jre/
Using CLASSPATH: /opt/atlassian/confluence/bin/bootstrap.jar:/opt/atlassian/confluence/bin/tomcat-juli.jar
Using CATALINA_PID: /opt/atlassian/confluence/work/catalina.pid
12-Jun-2018 08:00:20.122 WARNING [main] org.apache.tomcat.util.digester.SetPropertiesRule.begin [SetPropertiesRule]{Server} Setting property 'debug' to '0' did not find a matching property.
12-Jun-2018 08:00:20.203 WARNING [main] org.apache.catalina.startup.SetAllPropertiesRule.begin [SetAllPropertiesRule]{Server/Service/Connector} Setting property 'debug' to '0' did not find a matching property.
12-Jun-2018 08:00:20.216 WARNING [main] org.apache.tomcat.util.digester.SetPropertiesRule.begin [SetPropertiesRule]{Server/Service/Engine} Setting property 'debug' to '0' did not find a matching property.
12-Jun-2018 08:00:20.223 WARNING [main] org.apache.tomcat.util.digester.SetPropertiesRule.begin [SetPropertiesRule]{Server/Service/Engine/Host} Setting property 'debug' to '0' did not find a matching property.
12-Jun-2018 08:00:20.282 WARNING [main] org.apache.tomcat.util.digester.SetPropertiesRule.begin [SetPropertiesRule]{Server/Service/Engine/Host/Context} Setting property 'debug' to '0' did not find a matching property.
12-Jun-2018 08:00:20.313 WARNING [main] org.apache.tomcat.util.digester.SetPropertiesRule.begin [SetPropertiesRule]{Server/Service/Engine/Host/Context} Setting property 'debug' to '0' did not find a matching property.
12-Jun-2018 08:00:20.679 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8090"]
12-Jun-2018 08:00:20.703 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read
12-Jun-2018 08:00:20.707 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 696 ms
12-Jun-2018 08:00:20.718 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service Tomcat-Standalone
12-Jun-2018 08:00:20.718 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/8.0.51
12-Jun-2018 08:00:23.351 INFO [localhost-startStop-2] org.apache.catalina.core.ApplicationContext.log Spring WebApplicationInitializers detected on classpath: [com.atlassian.synchrony.proxy.SynchronyDispatcherServletInitializer@182128de]
2018-06-12 08:00:23,659 INFO [localhost-startStop-1] [com.atlassian.confluence.lifecycle] contextInitialized Starting Confluence 6.5.3 [build 7502 based on commit hash 4a7eac426e5ef07034950de31bee1c5d626e2ea1] - synchrony version 2.1.0-release-confluence_6.5-8d720dbe
2018-06-12 08:00:27,512 INFO [localhost-startStop-1] [atlassian.confluence.cluster.DefaultClusterConfigurationHelper] lambda$populateExistingClusterSetupConfig$1 Populating setup configuration if running with Cluster mode...
12-Jun-2018 08:00:42.725 INFO [localhost-startStop-2] org.apache.catalina.core.ApplicationContext.log Initializing Spring FrameworkServlet 'dispatcher'
12-Jun-2018 08:00:42.726 INFO [localhost-startStop-2] org.springframework.web.servlet.DispatcherServlet.initServletBean FrameworkServlet 'dispatcher': initialization started
12-Jun-2018 08:00:42.732 INFO [localhost-startStop-2] org.springframework.web.context.support.AnnotationConfigWebApplicationContext.prepareRefresh Refreshing WebApplicationContext for namespace 'dispatcher-servlet': startup date [Tue Jun 12 08:00:42 CEST 2018]; root of context hierarchy
12-Jun-2018 08:00:42.809 INFO [localhost-startStop-2] org.springframework.web.context.support.AnnotationConfigWebApplicationContext.loadBeanDefinitions Registering annotated classes: [class com.atlassian.synchrony.proxy.websocket.WebSocketConfig,class com.atlassian.synchrony.proxy.web.SynchronyWebMvcConfig]
12-Jun-2018 08:00:43.462 INFO [localhost-startStop-2] org.springframework.scheduling.concurrent.ThreadPoolTaskScheduler.initialize Initializing ExecutorService 'defaultSockJsTaskScheduler'
12-Jun-2018 08:00:43.534 INFO [localhost-startStop-2] org.springframework.web.socket.server.support.WebSocketHandlerMapping.registerHandler Mapped URL path [/v1/bayeux-sync1] onto handler of type [class org.springframework.web.socket.server.support.WebSocketHttpRequestHandler]
12-Jun-2018 08:00:43.766 INFO [localhost-startStop-2] org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerMapping.register Mapped "{[/reload],methods=[PUT]}" onto public org.springframework.http.ResponseEntity com.atlassian.synchrony.proxy.web.SynchronyProxyRestController.reloadConfiguration(com.atlassian.synchrony.proxy.web.SynchronyProxyConfigPayload)
12-Jun-2018 08:00:43.768 INFO [localhost-startStop-2] org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerMapping.register Mapped "{[/healthcheck]}" onto public com.atlassian.synchrony.proxy.web.HealthCheckResult com.atlassian.synchrony.proxy.web.SynchronyProxyRestController.getSynchronyProxyInfo()
12-Jun-2018 08:00:43.805 INFO [localhost-startStop-2] org.springframework.web.servlet.handler.SimpleUrlHandlerMapping.registerHandler Mapped URL path [/**] onto handler of type [class org.springframework.web.servlet.resource.DefaultServletHttpRequestHandler]
12-Jun-2018 08:00:44.241 INFO [localhost-startStop-2] org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.initControllerAdviceCache Looking for @ControllerAdvice: WebApplicationContext for namespace 'dispatcher-servlet': startup date [Tue Jun 12 08:00:42 CEST 2018]; root of context hierarchy
12-Jun-2018 08:00:44.451 INFO [localhost-startStop-2] org.springframework.context.support.DefaultLifecycleProcessor.start Starting beans in phase 2147483647
12-Jun-2018 08:00:44.489 INFO [localhost-startStop-2] org.springframework.web.servlet.DispatcherServlet.initServletBean FrameworkServlet 'dispatcher': initialization completed in 1763 ms

Regards,

Gorazd

Moses Thomas_08kyb0 · Answer

@hgorazdYou should be able to  login into  confluence are  you  able ?