how do I map issues which are in a workflow status I am about to delete
You don't need to - JIRA will run you through migrating them when you swap to the new workflow scheme.
There shouldn't be a problem - when you delete a status from the workflow it will automatically ask you which status you want the existing issues to be moved to.
OR... what he said (points to Nic's answer)
Our timing is just a wee bit out of sync!
Good point - you're right for when they're using Simplified workflow I forgot.
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