My company's logo is not the same size as the default logo (upper left of screen) that comes with Jira. I used to be able to specify the dimensions of the logo to keep the aspect ratio correct.
How is this done in Jira 4.4?
This functionality was removed from JIRA 4.4. I believe there are plans to add it back in the future and a feature request has already been created. You can follow the issue by "watching" it (as well as voting and commenting on it) via the feature request:
https://jira.atlassian.com/browse/JRA-25334
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