If aubversion changes are incorrect and we delete them, the JIRA subversion tab history does not change. Is re-index the only way JIRA can show the changes>
You need to rebuild the indices. I am assuming you are using subversion plugin verses the subversion plus plugin
https://confluence.atlassian.com/display/JIRAKB/Upgrading+JIRA+subversion+plugin+fails+due+to+subversion+indexes
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