I am trying to upgrade confluence from 4.1.6 to 5.4 and my upgrade was successful in the logs. After upgrade, I am able to login to new confluence 5.4 and I see all the spaces and pages on the left pane(Documentation Theme). I searched all spaces and tried mulple pages but there was no page content displayed on the right side pane. I see the following warning message in the log file.
2014-02-11 17:34:35,384 INFO [main] [atlassian.plugin.manager.DefaultPluginManager] init Initialising the plugin system
2014-02-11 17:34:57,143 WARN [main] [factory.transform.stage.GenerateManifestStage] assertSpringAvailableIfRequired The Spring Manifest header in jar 'activeobjects-confluence-spi-0.24-m5-confluence.jar' isn't set for a 300 second timeout waiting for dependencies. Please add ';timeout:=300'
2014-02-11 17:35:00,942 WARN [main] [factory.transform.stage.GenerateManifestStage] assertSpringAvailableIfRequired The Spring Manifest header in jar 'applinks-plugin-4.0.11.jar' isn't set for a 300 second timeout waiting for dependencies. Please add ';timeout:=300'
2014-02-11 17:35:01,465 WARN [main] [factory.transform.stage.GenerateManifestStage] assertSpringAvailableIfRequired The Spring Manifest header in jar 'atlassian-failure-cache-plugin-0.6.jar' isn't set for a 300 second timeout waiting for dependencies. Please add ';timeout:=300'
2014-02-11 17:35:08,692 WARN [main] [factory.transform.stage.GenerateManifestStage] assertSpringAvailableIfRequired The Spring Manifest header in jar 'atlassian-pretty-urls-plugin-1.5.jar' isn't set for a 300 second timeout waiting for dependencies. Please add ';timeout:=300'
2014-02-11 17:35:09,669 WARN [main] [factory.transform.stage.GenerateManifestStage] assertSpringAvailableIfRequired The Spring Manifest header in jar 'atlassian-rest-module-2.8.0-m7.jar' isn't set for a 300 second timeout waiting for dependencies. Please add ';timeout:=300'
2014-02-11 17:35:10,546 WARN [main] [factory.transform.stage.GenerateManifestStage] assertSpringAvailableIfRequired The Spring Manifest header in jar 'atlassian-template-renderer-api-1.4.3.jar' isn't set for a 300 second timeout waiting for dependencies. Please add ';timeout:=300'
2014-02-11 17:35:11,142 WARN [main] [factory.transform.stage.GenerateManifestStage] assertSpringAvailableIfRequired The Spring Manifest header in jar 'atlassian-template-renderer-velocity16-plugin-1.4.3.jar' isn't set for a 300 second timeout waiting for dependencies. Please add ';timeout:=300'
2014-02-11 17:35:12,846 WARN [main] [factory.transform.stage.ScanDescriptorForHostClassesStage] execute The plugin 'atlassian-universal-plugin-manager-plugin-2.14.jar' uses a package 'org.apache.commons.fileupload.servlet' that is also exported by the application. It is highly recommended that the plugin use its own packages.
2014-02-11 17:35:13,953 WARN [main] [factory.transform.stage.GenerateManifestStage] assertSpringAvailableIfRequired The Spring Manifest header in jar 'atlassian-webhooks-plugin-0.17.3.jar' isn't set for a 300 second timeout waiting for dependencies. Please add ';timeout:=300'
2014-02-11 17:35:33,498 WARN [main] [factory.transform.stage.GenerateManifestStage] assertSpringAvailableIfRequired The Spring Manifest header in jar 'confluence-sal-plugin-5.4.2.jar' isn't set for a 300 second timeout waiting for dependencies. Please add ';timeout:=300'
2014-02-11 17:35:35,368 WARN [main] [factory.transform.stage.GenerateManifestStage] assertSpringAvailableIfRequired The Spring Manifest header in jar 'confluence-tdm-merger-5.4.2.jar' isn't set for a 300 second timeout waiting for dependencies. Please add ';timeout:=300'
2014-02-11 17:35:49,227 WARN [main] [factory.transform.stage.GenerateManifestStage] assertSpringAvailableIfRequired The Spring Manifest header in jar '1392159132000support-core-1.2.4.jar' isn't set for a 300 second timeout waiting for dependencies. Please add ';timeout:=300'
2014-02-11 17:35:51,283 WARN [main] [factory.transform.stage.GenerateManifestStage] assertSpringAvailableIfRequired The Spring Manifest header in jar '1392159132000supplier-core-1.0.6.jar' isn't set for a 300 second timeout waiting for dependencies. Please add ';timeout:=300'
