We're running JIRA 5.0, with JDK 1.6.0_24, running on a 64 bit linux VM (Linux 2.6.18-274.18.1.0.1.el5). The app is running on Apache Tomcat/6.0.35.
The application appears to be running normally but in the catalina.out and atlassian-jira.log files, it continuously spews out exceptions as shown below.
This makes the logfiles unusable (its impossible to find anything), also they are constantly filling up, which is also a nuisance.
We are planning to go live in production with JIRA 5.0 (migrating our teams over from v3.6) on April 27. We'd like to go into Production with this issue resolved.
Thanks.
2012-04-20 02:49:31,819 http-8080-13 WARN anonymous 169x12957x1 115kvla 172.19.107.69 /rest/usermanagement/1/user/group/nested core.entity.transaction.JNDIFactory JNDIFactory.getUserTransaction Failed to find UserTransaction named java:comp/env/UserTransaction in JNDI.
2012-04-20 02:49:31,821 http-8080-13 WARN anonymous 169x12957x1 115kvla 172.19.107.69 /rest/usermanagement/1/user/group/nested core.entity.transaction.JNDIFactory NamingException while finding UserTransaction named java:comp/env/UserTransaction in JNDI.
javax.naming.NameNotFoundException: Name UserTransaction is not bound in this Context
at org.apache.naming.NamingContext.lookup(NamingContext.java:770)
at org.apache.naming.NamingContext.lookup(NamingContext.java:140)
at org.apache.naming.NamingContext.lookup(NamingContext.java:781)
at org.apache.naming.NamingContext.lookup(NamingContext.java:140)
at org.apache.naming.NamingContext.lookup(NamingContext.java:781)
at org.apache.naming.NamingContext.lookup(NamingContext.java:153)
at org.apache.naming.SelectorContext.lookup(SelectorContext.java:152)
at javax.naming.InitialContext.lookup(InitialContext.java:392)
at org.ofbiz.core.entity.transaction.JNDIFactory.getUserTransaction(JNDIFactory.java:113)
at org.ofbiz.core.entity.TransactionFactory.getUserTransaction(TransactionFactory.java:93)
at org.ofbiz.core.entity.TransactionUtil.getStatus(TransactionUtil.java:81)
at org.ofbiz.core.entity.jdbc.SQLProcessor.getConnection(SQLProcessor.java:412)
at org.ofbiz.core.entity.GenericDAO.insert(GenericDAO.java:98)
at org.ofbiz.core.entity.GenericHelperDAO.create(GenericHelperDAO.java:64)
at org.ofbiz.core.entity.GenericDelegator.create(GenericDelegator.java:487)
at org.ofbiz.core.entity.GenericDelegator.create(GenericDelegator.java:467)
at org.ofbiz.core.entity.GenericValue.create(GenericValue.java:98)
at com.atlassian.crowd.embedded.ofbiz.db.OfBizHelper.createValue(OfBizHelper.java:162)
at com.atlassian.crowd.embedded.ofbiz.OfBizUserDao.storeAttributeValue(OfBizUserDao.java:277)
at com.atlassian.crowd.embedded.ofbiz.OfBizUserDao.storeAttributeValues(OfBizUserDao.java:254)
at com.atlassian.crowd.embedded.ofbiz.OfBizUserDao.storeAttributes(OfBizUserDao.java:237)
at com.atlassian.crowd.directory.AbstractInternalDirectory.processAuthentication(AbstractInternalDirectory.java:196)
at com.atlassian.crowd.directory.AbstractInternalDirectory.authenticate(AbstractInternalDirectory.java:148)
at com.atlassian.crowd.manager.directory.DirectoryManagerGeneric.authenticateUser(DirectoryManagerGeneric.java:277)
at com.atlassian.crowd.manager.application.ApplicationServiceGeneric.authenticateUser(ApplicationServiceGeneric.java:122)
at com.atlassian.crowd.embedded.core.CrowdServiceImpl.authenticate(CrowdServiceImpl.java:67)
at com.atlassian.crowd.embedded.core.DelegatingCrowdService.authenticate(DelegatingCrowdService.java:35)
at com.atlassian.crowd.embedded.core.FilteredCrowdServiceImpl.authenticate(FilteredCrowdServiceImpl.java:43)
at com.atlassian.jira.security.login.JiraSeraphAuthenticator.crowdServiceAuthenticate(JiraSeraphAuthenticator.java:75)
at com.atlassian.jira.security.login.JiraSeraphAuthenticator.authenticate(JiraSeraphAuthenticator.java:40)
at com.atlassian.seraph.auth.DefaultAuthenticator.login(DefaultAuthenticator.java:94)
at com.atlassian.seraph.filter.PasswordBasedLoginFilter.runAuthentication(PasswordBasedLoginFilter.java:127)
at com.atlassian.seraph.filter.PasswordBasedLoginFilter.login(PasswordBasedLoginFilter.java:72)
at com.atlassian.seraph.filter.BaseLoginFilter.doFilter(BaseLoginFilter.java:130)
at com.atlassian.jira.web.filters.JiraLoginFilter.doFilter(JiraLoginFilter.java:70)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at com.atlassian.plugin.servlet.filter.IteratingFilterChain.doFilter(IteratingFilterChain.java:46)
at com.atlassian.plugin.servlet.filter.DelegatingPluginFilter$1.doFilter(DelegatingPluginFilter.java:66)
at com.atlassian.oauth.serviceprovider.internal.servlet.OAuthFilter.doFilter(OAuthFilter.java:71)
at com.atlassian.plugin.servlet.filter.DelegatingPluginFilter.doFilter(DelegatingPluginFilter.java:74)
at com.atlassian.plugin.servlet.filter.IteratingFilterChain.doFilter(IteratingFilterChain.java:42)
at com.atlassian.plugin.servlet.filter.DelegatingPluginFilter$1.doFilter(DelegatingPluginFilter.java:66)
at com.atlassian.plugins.rest.module.servlet.RestSeraphFilter.doFilter(RestSeraphFilter.java:40)
at com.atlassian.plugin.servlet.filter.DelegatingPluginFilter.doFilter(DelegatingPluginFilter.java:74)
at com.atlassian.plugin.servlet.filter.IteratingFilterChain.doFilter(IteratingFilterChain.java:42)
at com.atlassian.plugin.servlet.filter.DelegatingPluginFilter$1.doFilter(DelegatingPluginFilter.java:66)
at com.atlassian.crowd.plugin.rest.filter.BasicApplicationAuthenticationFilter.doFilter(BasicApplicationAuthenticationFilter.java:67)
at com.atlassian.plugin.servlet.filter.DelegatingPluginFilter.doFilter(DelegatingPluginFilter.java:74)
at com.atlassian.plugin.servlet.filter.IteratingFilterChain.doFilter(IteratingFilterChain.java:42)
at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:77)
at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:63)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at com.atlassian.johnson.filters.AbstractJohnsonFilter.doFilter(AbstractJohnsonFilter.java:71)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.tuckey.web.filters.urlrewrite.UrlRewriteFilter.doFilter(UrlRewriteFilter.java:350)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at com.atlassian.gzipfilter.GzipFilter.doFilterInternal(GzipFilter.java:81)
at com.atlassian.gzipfilter.GzipFilter.doFilter(GzipFilter.java:51)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at com.atlassian.plugin.servlet.filter.IteratingFilterChain.doFilter(IteratingFilterChain.java:46)
at com.atlassian.plugin.servlet.filter.DelegatingPluginFilter$1.doFilter(DelegatingPluginFilter.java:66)
at com.atlassian.crowd.plugin.rest.filter.RestServiceVersionFilter.doFilter(RestServiceVersionFilter.java:56)
at com.atlassian.plugin.servlet.filter.DelegatingPluginFilter.doFilter(DelegatingPluginFilter.java:74)
at com.atlassian.plugin.servlet.filter.IteratingFilterChain.doFilter(IteratingFilterChain.java:42)
at com.atlassian.plugin.servlet.filter.DelegatingPluginFilter$1.doFilter(DelegatingPluginFilter.java:66)
at com.sysbliss.jira.plugins.workflow.servlet.JWDSendRedirectFilter.doFilter(JWDSendRedirectFilter.java:25)
at com.atlassian.plugin.servlet.filter.DelegatingPluginFilter.doFilter(DelegatingPluginFilter.java:74)
at com.atlassian.plugin.servlet.filter.IteratingFilterChain.doFilter(IteratingFilterChain.java:42)
at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:77)
at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:63)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at com.atlassian.jira.web.filters.steps.ChainedFilterStepRunner.doFilter(ChainedFilterStepRunner.java:78)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at com.atlassian.core.filters.cache.AbstractCachingFilter.doFilter(AbstractCachingFilter.java:33)
at com.atlassian.core.filters.AbstractHttpFilter.doFilter(AbstractHttpFilter.java:31)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at com.atlassian.core.filters.encoding.AbstractEncodingFilter.doFilter(AbstractEncodingFilter.java:41)
at com.atlassian.core.filters.AbstractHttpFilter.doFilter(AbstractHttpFilter.java:31)
at com.atlassian.jira.web.filters.PathMatchingEncodingFilter.doFilter(PathMatchingEncodingFilter.java:45)
at com.atlassian.core.filters.AbstractHttpFilter.doFilter(AbstractHttpFilter.java:31)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at com.atlassian.jira.web.monitor.ActiveRequestsFilter$PassToChainFilterFunc.doFilter(ActiveRequestsFilter.java:346)
at com.atlassian.jira.web.monitor.ActiveRequestsFilter$DebugLogFilterFunc.doFilter(ActiveRequestsFilter.java:463)
at com.atlassian.jira.web.monitor.ActiveRequestsFilter.doFilter(ActiveRequestsFilter.java:173)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at com.atlassian.jira.startup.JiraStartupChecklistFilter.doFilter(JiraStartupChecklistFilter.java:75)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at com.atlassian.multitenant.servlet.MultiTenantServletFilter.doFilter(MultiTenantServletFilter.java:91)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at com.atlassian.jira.web.filters.steps.ChainedFilterStepRunner.doFilter(ChainedFilterStepRunner.java:78)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293)
at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:859)
at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:602)
at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489)
at java.lang.Thread.run(Thread.java:662)
2012-04-20 02:49:31,822 http-8080-13 WARN anonymous 169x12957x1 115kvla 172.19.107.69 /rest/usermanagement/1/user/group/nested core.entity.transaction.JNDIFactory JNDIFactory.getUserTransaction Failed to find UserTransaction named java:comp/env/UserTransaction in JNDI.
2012-04-20 02:49:31,829 http-8080-13 WARN anonymous 169x12957x1 115kvla 172.19.107.69 /rest/usermanagement/1/user/group/nested core.entity.transaction.JNDIFactory NamingException while finding UserTransaction named java:comp/env/UserTransaction in JNDI.
javax.naming.NameNotFoundException: Name UserTransaction is not bound in this Context
at org.apache.naming.NamingContext.lookup(NamingContext.java:770)
at org.apache.naming.NamingContext.lookup(NamingContext.java:140)
at org.apache.naming.NamingContext.lookup(NamingContext.java:781)
at org.apache.naming.NamingContext.lookup(NamingContext.java:140)
at org.apache.naming.NamingContext.lookup(NamingContext.java:781)
at org.apache.naming.NamingContext.lookup(NamingContext.java:153)
at org.apache.naming.SelectorContext.lookup(SelectorContext.java:152)
at javax.naming.InitialContext.lookup(InitialContext.java:392)
at org.ofbiz.core.entity.transaction.JNDIFactory.getUserTransaction(JNDIFactory.java:113)
at org.ofbiz.core.entity.TransactionFactory.getUserTransaction(TransactionFactory.java:93)
at org.ofbiz.core.entity.TransactionUtil.getStatus(TransactionUtil.java:81)
at org.ofbiz.core.entity.jdbc.SQLProcessor.getConnection(SQLProcessor.java:412)
at org.ofbiz.core.entity.jdbc.SQLProcessor.prepareStatement(SQLProcessor.java:515)
at org.ofbiz.core.entity.GenericDAO.selectListIteratorByCondition(GenericDAO.java:1034)
at org.ofbiz.core.entity.GenericDAO.selectByAnd(GenericDAO.java:605)
at org.ofbiz.core.entity.GenericHelperDAO.findByAnd(GenericHelperDAO.java:131)
at org.ofbiz.core.entity.GenericDelegator.findByAnd(GenericDelegator.java:788)
at org.ofbiz.core.entity.GenericDelegator.findByAnd(GenericDelegator.java:773)
at org.ofbiz.core.entity.GenericDelegator.findByAnd(GenericDelegator.java:750)
at sun.reflect.GeneratedMethodAccessor32.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at com.atlassian.multitenant.impl.MultiTenantComponentFactoryImpl$AbstractMultiTenantAwareInvocationHandler.invokeInternal(MultiTenantComponentFactoryImpl.java:181)
