No server id found after upgrade. BeanCreationException: Error creating bean with name 'macroIconManager'

Boris18

FIX: The problem is fixed (kind of..) I have removed "index" folder from \Program Files\Atlassian\Application Data\Confluence (so it is kind of like re-indexing). Restarted and also had to execute "DELETEFROMCONFVERSION;" to get rid of previous updates from the database, since I have downgraded before, my installation sort of f**ed up. Now trying to upgrade to latest version

Thanks to:

1. Supporter: Fabio Racobaldo [Herzum]

2. Technical: https://confluence.atlassian.com/display/CONFKB/Rebuild+the+Content+Indices+from+Scratch

3. Mental fluffer: Miley Cyrus

-----------------------------------------------------------------------------

I've been using Jira and Confluence for a year now without any problem that I was not able to solve. Then my license expired and it stayed like that for a while (2-3 days) until I updated the license. During that time I have upgraded both Jira and Confluence to newer versions and got a message on starting them up that I was not able to use them because my license did not support these versions.

So, after updating license, I got my Jira back and working, but when I start Confluence service, I get the following:

-----------------------------------------------------------

Catalina...log gives the following:

apr 12, 2014 7:27:10 AM org.apache.catalina.core.StandardHostValve custom
SEVERE: Exception Processing ErrorPage[errorCode=500, location=/500page.jsp]
java.lang.NullPointerException
	at com.atlassian.spring.container.ContainerManager.getComponent(ContainerManager.java:33)
	at com.atlassian.confluence.setup.sitemesh.PluginDecoratorMapper.getPluginAccessor(PluginDecoratorMapper.java:74)
	at com.atlassian.confluence.setup.sitemesh.PluginDecoratorMapper.getDecorator(PluginDecoratorMapper.java:23)
	at com.opensymphony.module.sitemesh.mapper.AbstractDecoratorMapper.getDecorator(AbstractDecoratorMapper.java:45)
	at com.opensymphony.module.sitemesh.mapper.InlineDecoratorMapper.getDecorator(InlineDecoratorMapper.java:41)
	at com.atlassian.confluence.util.profiling.ConfluenceDecoratorSelector.selectDecorator(ConfluenceDecoratorSelector.java:59)
	at com.opensymphony.sitemesh.webapp.SiteMeshFilter.doFilter(SiteMeshFilter.java:83)
	at com.atlassian.confluence.util.profiling.ProfilingPageFilter.doFilter(ProfilingPageFilter.java:44)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:71)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:63)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.seraph.filter.SecurityFilter.doFilter(SecurityFilter.java:211)
	at com.atlassian.confluence.web.filter.ConfluenceSecurityFilter.doFilter(ConfluenceSecurityFilter.java:28)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.seraph.filter.BaseLoginFilter.doFilter(BaseLoginFilter.java:150)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:71)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:63)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:71)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:63)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.confluence.web.filter.DebugFilter.doFilter(DebugFilter.java:44)
	at com.atlassian.core.filters.AbstractHttpFilter.doFilter(AbstractHttpFilter.java:31)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:646)
	at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:438)
	at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:374)
	at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:302)
	at org.apache.catalina.core.StandardHostValve.custom(StandardHostValve.java:421)
	at org.apache.catalina.core.StandardHostValve.status(StandardHostValve.java:342)
	at org.apache.catalina.core.StandardHostValve.throwable(StandardHostValve.java:286)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:141)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293)
	at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:859)
	at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:602)
	at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489)
	at java.lang.Thread.run(Unknown Source)

apr 12, 2014 7:33:07 AM org.apache.coyote.http11.Http11Protocol pause
INFO: Pausing Coyote HTTP/1.1 on http-12331
apr 12, 2014 7:33:08 AM org.apache.catalina.core.StandardService stop
INFO: Stopping service Tomcat-Standalone
apr 12, 2014 7:33:08 AM org.apache.catalina.loader.WebappClassLoader clearReferencesJdbc
SEVERE: The web application [/confluence] registered the JDBC driver [org.hsqldb.jdbc.JDBCDriver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
apr 12, 2014 7:33:08 AM org.apache.catalina.loader.WebappClassLoader clearReferencesJdbc
SEVERE: The web application [/confluence] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
apr 12, 2014 7:33:09 AM org.apache.catalina.loader.WebappClassLoader clearReferencesJdbc
SEVERE: The web application [/confluence] registered the JDBC driver [org.postgresql.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
apr 12, 2014 7:33:09 AM org.apache.catalina.loader.WebappClassLoader clearReferencesJdbc
SEVERE: The web application [/confluence] registered the JDBC driver [net.sourceforge.jtds.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
apr 12, 2014 7:33:09 AM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [/confluence] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@639bae21]) and a value of type [org.dom4j.DocumentFactory] (value [org.dom4j.DocumentFactory@1c52b9e]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
apr 12, 2014 7:33:09 AM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [/confluence] created a ThreadLocal with key of type [org.apache.log4j.helpers.ThreadLocalMap] (value [org.apache.log4j.helpers.ThreadLocalMap@37b292fa]) and a value of type [java.util.Hashtable] (value [{}]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
apr 12, 2014 7:33:10 AM org.apache.coyote.http11.Http11Protocol destroy
INFO: Stopping Coyote HTTP/1.1 on http-12331
apr 12, 2014 7:33:19 AM org.apache.tomcat.util.digester.SetPropertiesRule begin
WARNING: [SetPropertiesRule]{Server} Setting property 'debug' to '0' did not find a matching property.
apr 12, 2014 7:33:19 AM org.apache.tomcat.util.digester.SetPropertiesRule begin
WARNING: [SetPropertiesRule]{Server/Service/Engine} Setting property 'debug' to '0' did not find a matching property.
apr 12, 2014 7:33:19 AM org.apache.tomcat.util.digester.SetPropertiesRule begin
WARNING: [SetPropertiesRule]{Server/Service/Engine/Host} Setting property 'debug' to '0' did not find a matching property.
apr 12, 2014 7:33:19 AM org.apache.tomcat.util.digester.SetPropertiesRule begin
WARNING: [SetPropertiesRule]{Server/Service/Engine/Host/Context} Setting property 'debug' to '0' did not find a matching property.
apr 12, 2014 7:33:19 AM org.apache.coyote.http11.Http11Protocol init
INFO: Initializing Coyote HTTP/1.1 on http-12331
apr 12, 2014 7:33:19 AM org.apache.catalina.startup.Catalina load
INFO: Initialization processed in 371 ms
apr 12, 2014 7:33:19 AM org.apache.catalina.core.StandardService start
INFO: Starting service Tomcat-Standalone
apr 12, 2014 7:33:19 AM org.apache.catalina.core.StandardEngine start
INFO: Starting Servlet Engine: Apache Tomcat/6.0.35
apr 12, 2014 7:33:33 AM org.apache.coyote.http11.Http11Protocol start
INFO: Starting Coyote HTTP/1.1 on http-12331
apr 12, 2014 7:33:33 AM org.apache.catalina.startup.Catalina start
INFO: Server startup in 13855 ms

---------------------------------------------------

Confluence...stderr...log:

apr 12, 2014 7:27:10 AM org.apache.catalina.core.StandardHostValve custom
SEVERE: Exception Processing ErrorPage[errorCode=500, location=/500page.jsp]
java.lang.NullPointerException
	at com.atlassian.spring.container.ContainerManager.getComponent(ContainerManager.java:33)
	at com.atlassian.confluence.setup.sitemesh.PluginDecoratorMapper.getPluginAccessor(PluginDecoratorMapper.java:74)
	at com.atlassian.confluence.setup.sitemesh.PluginDecoratorMapper.getDecorator(PluginDecoratorMapper.java:23)
	at com.opensymphony.module.sitemesh.mapper.AbstractDecoratorMapper.getDecorator(AbstractDecoratorMapper.java:45)
	at com.opensymphony.module.sitemesh.mapper.InlineDecoratorMapper.getDecorator(InlineDecoratorMapper.java:41)
	at com.atlassian.confluence.util.profiling.ConfluenceDecoratorSelector.selectDecorator(ConfluenceDecoratorSelector.java:59)
	at com.opensymphony.sitemesh.webapp.SiteMeshFilter.doFilter(SiteMeshFilter.java:83)
	at com.atlassian.confluence.util.profiling.ProfilingPageFilter.doFilter(ProfilingPageFilter.java:44)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:71)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:63)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.seraph.filter.SecurityFilter.doFilter(SecurityFilter.java:211)
	at com.atlassian.confluence.web.filter.ConfluenceSecurityFilter.doFilter(ConfluenceSecurityFilter.java:28)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.seraph.filter.BaseLoginFilter.doFilter(BaseLoginFilter.java:150)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:71)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:63)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:71)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:63)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.confluence.web.filter.DebugFilter.doFilter(DebugFilter.java:44)
	at com.atlassian.core.filters.AbstractHttpFilter.doFilter(AbstractHttpFilter.java:31)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:646)
	at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:438)
	at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:374)
	at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:302)
	at org.apache.catalina.core.StandardHostValve.custom(StandardHostValve.java:421)
	at org.apache.catalina.core.StandardHostValve.status(StandardHostValve.java:342)
	at org.apache.catalina.core.StandardHostValve.throwable(StandardHostValve.java:286)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:141)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293)
	at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:859)
	at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:602)
	at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489)
	at java.lang.Thread.run(Unknown Source)

apr 12, 2014 7:33:07 AM org.apache.coyote.http11.Http11Protocol pause
INFO: Pausing Coyote HTTP/1.1 on http-12331
apr 12, 2014 7:33:08 AM org.apache.catalina.core.StandardService stop
INFO: Stopping service Tomcat-Standalone
apr 12, 2014 7:33:08 AM org.apache.catalina.loader.WebappClassLoader clearReferencesJdbc
SEVERE: The web application [/confluence] registered the JDBC driver [org.hsqldb.jdbc.JDBCDriver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
apr 12, 2014 7:33:08 AM org.apache.catalina.loader.WebappClassLoader clearReferencesJdbc
SEVERE: The web application [/confluence] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
apr 12, 2014 7:33:09 AM org.apache.catalina.loader.WebappClassLoader clearReferencesJdbc
SEVERE: The web application [/confluence] registered the JDBC driver [org.postgresql.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
apr 12, 2014 7:33:09 AM org.apache.catalina.loader.WebappClassLoader clearReferencesJdbc
SEVERE: The web application [/confluence] registered the JDBC driver [net.sourceforge.jtds.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
apr 12, 2014 7:33:09 AM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [/confluence] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@639bae21]) and a value of type [org.dom4j.DocumentFactory] (value [org.dom4j.DocumentFactory@1c52b9e]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
apr 12, 2014 7:33:09 AM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [/confluence] created a ThreadLocal with key of type [org.apache.log4j.helpers.ThreadLocalMap] (value [org.apache.log4j.helpers.ThreadLocalMap@37b292fa]) and a value of type [java.util.Hashtable] (value [{}]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
apr 12, 2014 7:33:10 AM org.apache.coyote.http11.Http11Protocol destroy
INFO: Stopping Coyote HTTP/1.1 on http-12331

2014-04-12 07:33:18 Commons Daemon procrun stderr initialized
apr 12, 2014 7:33:19 AM org.apache.tomcat.util.digester.SetPropertiesRule begin
WARNING: [SetPropertiesRule]{Server} Setting property 'debug' to '0' did not find a matching property.
apr 12, 2014 7:33:19 AM org.apache.tomcat.util.digester.SetPropertiesRule begin
WARNING: [SetPropertiesRule]{Server/Service/Engine} Setting property 'debug' to '0' did not find a matching property.
apr 12, 2014 7:33:19 AM org.apache.tomcat.util.digester.SetPropertiesRule begin
WARNING: [SetPropertiesRule]{Server/Service/Engine/Host} Setting property 'debug' to '0' did not find a matching property.
apr 12, 2014 7:33:19 AM org.apache.tomcat.util.digester.SetPropertiesRule begin
WARNING: [SetPropertiesRule]{Server/Service/Engine/Host/Context} Setting property 'debug' to '0' did not find a matching property.
apr 12, 2014 7:33:19 AM org.apache.coyote.http11.Http11Protocol init
INFO: Initializing Coyote HTTP/1.1 on http-12331
apr 12, 2014 7:33:19 AM org.apache.catalina.startup.Catalina load
INFO: Initialization processed in 371 ms
apr 12, 2014 7:33:19 AM org.apache.catalina.core.StandardService start
INFO: Starting service Tomcat-Standalone
apr 12, 2014 7:33:19 AM org.apache.catalina.core.StandardEngine start
INFO: Starting Servlet Engine: Apache Tomcat/6.0.35
apr 12, 2014 7:33:33 AM org.apache.coyote.http11.Http11Protocol start
INFO: Starting Coyote HTTP/1.1 on http-12331
apr 12, 2014 7:33:33 AM org.apache.catalina.startup.Catalina start
INFO: Server startup in 13855 ms

------------------------------------------------------

Confluence...stdout...log: (i found that this is marked as aticket and stays as unresolved still in known isues)

2014-04-12 07:33:18 Commons Daemon procrun stdout initialized
2014-04-12 07:33:20,689 INFO [main] [com.atlassian.confluence.lifecycle] contextInitialized Starting Confluence 5.1.5 [build 4252 based on commit hash 6ac85e9b14675c5514a674e1aecae99c9505ed36]
2014-04-12 07:33:23,169 WARN [main] [atlassian.config.xml.AbstractDom4jXmlConfigurationPersister] saveDocumentAtomically Unable to move C:\Program Files\Atlassian\Application Data\Confluence\confluence.cfg.xml217937326079623724tmp to C:\Program Files\Atlassian\Application Data\Confluence\confluence.cfg.xml. Falling back to non-atomic overwrite.

-------------------------------------------------------

My confluence.cfg.xml file:

<?xml version="1.0" encoding="UTF-8"?>

<confluence-configuration>
  <setupStep>complete</setupStep>
  <setupType>custom</setupType>
  <buildNumber>4226</buildNumber>
  <properties>
    <property name="admin.ui.allow.daily.backup.custom.location">false</property>
    <property name="admin.ui.allow.manual.backup.download">false</property>
    <property name="admin.ui.allow.site.support.email">false</property>
    <property name="attachments.dir">${confluenceHome}\attachments</property>
    <property name="confluence.license.hash">.....hidden....</property>
    <property name="confluence.license.message">.....hidden...</property>
    <property name="confluence.setup.server.id">B426-KM0U-CHTU-50JT</property>
    <property name="confluence.webapp.context.path">/confluence</property>
    <property name="hibernate.c3p0.acquire_increment">1</property>
    <property name="hibernate.c3p0.idle_test_period">100</property>
    <property name="hibernate.c3p0.max_size">30</property>
    <property name="hibernate.c3p0.max_statements">0</property>
    <property name="hibernate.c3p0.min_size">0</property>
    <property name="hibernate.c3p0.timeout">30</property>
    <property name="hibernate.connection.driver_class">net.sourceforge.jtds.jdbc.Driver</property>
    <property name="hibernate.connection.isolation">2</property>
    <property name="hibernate.connection.password">....hidden...</property>
    <property name="hibernate.connection.url">jdbc:jtds:sqlserver:....hidden...</property>
    <property name="hibernate.connection.username">...hidden...</property>
    <property name="hibernate.database.lower_non_ascii_supported">true</property>
    <property name="hibernate.dialect">net.sf.hibernate.dialect.SQLServerIntlDialect</property>
    <property name="hibernate.setup">true</property>
    <property name="lucene.index.dir">${confluenceHome}\index</property>
    <property name="webwork.multipart.saveDir">${confluenceHome}\temp</property>
  </properties>
</confluence-configuration>

---------------------------------------------------------------

Server.xml:

<Server port="8000" shutdown="SHUTDOWN" debug="0">

    <Service name="Tomcat-Standalone">

        <Connector className="org.apache.coyote.tomcat4.CoyoteConnector" port="12331" minProcessors="5"

                   maxProcessors="75"

                   enableLookups="false" redirectPort="8443" acceptCount="10" debug="0" connectionTimeout="20000"

                   useURIValidationHack="false" URIEncoding="UTF-8"/>



        <Engine name="Standalone" defaultHost="localhost" debug="0">



            <Host name="localhost" debug="0" appBase="webapps" unpackWARs="true" autoDeploy="false">



                <Context path="/confluence" docBase="../confluence" debug="0" reloadable="false" useHttpOnly="true">

                    <!-- Logger is deprecated in Tomcat 5.5. Logging configuration for Confluence is specified in confluence/WEB-INF/classes/log4j.properties -->

                    <Manager pathname="" />

                </Context>

            </Host>



        </Engine>

    </Service>

</Server>

----------------------------------------------------------

And the main log file "atlassian-confluence.log:"

2014-04-12 08:59:38,900 INFO [main] [com.atlassian.confluence.lifecycle] contextInitialized Starting Confluence 5.1.5 [build 4252 based on commit hash 6ac85e9b14675c5514a674e1aecae99c9505ed36]
2014-04-12 08:59:40,865 WARN [main] [atlassian.config.xml.AbstractDom4jXmlConfigurationPersister] saveDocumentAtomically Unable to move C:\Program Files\Atlassian\Application Data\Confluence\confluence.cfg.xml98462263393392854tmp to C:\Program Files\Atlassian\Application Data\Confluence\confluence.cfg.xml. Falling back to non-atomic overwrite.
2014-04-12 08:59:40,896 INFO [main] [springframework.web.context.ContextLoader] initWebApplicationContext Root WebApplicationContext: initialization started
2014-04-12 08:59:43,549 INFO [main] [com.atlassian.confluence.lifecycle] <init> Loading EhCache cache manager
2014-04-12 08:59:47,464 ERROR [main] [atlassian.plugin.util.FileUtils] conditionallyExtractZipFile Found file:/C:/Program%20Files/Atlassian/Confluence/webapps/../confluence/WEB-INF/atlassian-bundled-plugins, but failed to read file
java.io.FileNotFoundException: C:\Program Files\Atlassian\Confluence\webapps\..\confluence\WEB-INF\atlassian-bundled-plugins (The system cannot find the file specified)
	at java.io.FileInputStream.open(Native Method)
	at java.io.FileInputStream.<init>(Unknown Source)
	at java.io.FileInputStream.<init>(Unknown Source)
	at sun.net.www.protocol.file.FileURLConnection.connect(Unknown Source)
	at sun.net.www.protocol.file.FileURLConnection.getInputStream(Unknown Source)
	at java.net.URL.openStream(Unknown Source)
	at com.atlassian.plugin.util.zip.UrlUnzipper.entries(UrlUnzipper.java:47)
	at com.atlassian.plugin.util.zip.AbstractUnzipper.conditionalUnzip(AbstractUnzipper.java:78)
	at com.atlassian.plugin.util.FileUtils.conditionallyExtractZipFile(FileUtils.java:30)
	at com.atlassian.plugin.loaders.BundledPluginLoader.buildScanner(BundledPluginLoader.java:77)
	at com.atlassian.plugin.loaders.BundledPluginLoader.<init>(BundledPluginLoader.java:36)
	at com.atlassian.confluence.plugin.BundledPluginLoaderFactory.getObject(BundledPluginLoaderFactory.java:96)
	at org.springframework.beans.factory.support.FactoryBeanRegistrySupport$1.run(FactoryBeanRegistrySupport.java:121)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.FactoryBeanRegistrySupport.doGetObjectFromFactoryBean(FactoryBeanRegistrySupport.java:116)
	at org.springframework.beans.factory.support.FactoryBeanRegistrySupport.getObjectFromFactoryBean(FactoryBeanRegistrySupport.java:91)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getObjectForBeanInstance(AbstractBeanFactory.java:1288)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:275)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveManagedList(BeanDefinitionValueResolver.java:287)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:126)
	at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:479)
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:162)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.getBeansOfType(DefaultListableBeanFactory.java:308)
	at org.springframework.context.support.AbstractApplicationContext.getBeansOfType(AbstractApplicationContext.java:947)
	at org.springframework.context.support.AbstractApplicationContext.registerListeners(AbstractApplicationContext.java:701)
	at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:377)
	at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:255)
	at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:199)
	at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:45)
	at com.atlassian.spring.container.ContainerContextLoaderListener.contextInitialized(ContainerContextLoaderListener.java:32)
	at com.atlassian.confluence.setup.ConfluenceBootstrappedContextLoaderListener.contextInitialized(ConfluenceBootstrappedContextLoaderListener.java:32)
	at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4206)
	at org.apache.catalina.core.StandardContext.start(StandardContext.java:4705)
	at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057)
	at org.apache.catalina.core.StandardHost.start(StandardHost.java:840)
	at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057)
	at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:463)
	at org.apache.catalina.core.StandardService.start(StandardService.java:525)
	at org.apache.catalina.core.StandardServer.start(StandardServer.java:754)
	at org.apache.catalina.startup.Catalina.start(Catalina.java:595)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
	at java.lang.reflect.Method.invoke(Unknown Source)
	at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289)
	at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414)
2014-04-12 08:59:50,303 ERROR [main] [springframework.web.context.ContextLoader] initWebApplicationContext Context initialization failed
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'macroIconManager' defined in class path resource [services/pluginServiceContext.xml]: Cannot resolve reference to bean 'httpRetrievalService' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'httpRetrievalService' defined in class path resource [applicationContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'settingsManager' defined in class path resource [applicationContext.xml]: Cannot resolve reference to bean 'upgradeManager' while setting bean property 'upgradeManager'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'upgradeManager' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'removeClassicThemeUpgradeTask' while setting bean property 'upgradeTasks' with key [2]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'removeClassicThemeUpgradeTask' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'spaceManager' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'spaceManager' defined in class path resource [applicationContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexManager' defined in class path resource [indexingSubsystemContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexTaskPerformer' defined in class path resource [indexingSubsystemContext.xml]: Cannot resolve reference to bean 'luceneConnection' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'luceneConnection' defined in class path resource [indexingSubsystemContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:275)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
	at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:495)
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:162)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:429)
	at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:728)
	at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:380)
	at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:255)
	at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:199)
	at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:45)
	at com.atlassian.spring.container.ContainerContextLoaderListener.contextInitialized(ContainerContextLoaderListener.java:32)
	at com.atlassian.confluence.setup.ConfluenceBootstrappedContextLoaderListener.contextInitialized(ConfluenceBootstrappedContextLoaderListener.java:32)
	at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4206)
	at org.apache.catalina.core.StandardContext.start(StandardContext.java:4705)
	at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057)
	at org.apache.catalina.core.StandardHost.start(StandardHost.java:840)
	at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057)
	at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:463)
	at org.apache.catalina.core.StandardService.start(StandardService.java:525)
	at org.apache.catalina.core.StandardServer.start(StandardServer.java:754)
	at org.apache.catalina.startup.Catalina.start(Catalina.java:595)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
	at java.lang.reflect.Method.invoke(Unknown Source)
	at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289)
	at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414)
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'httpRetrievalService' defined in class path resource [applicationContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'settingsManager' defined in class path resource [applicationContext.xml]: Cannot resolve reference to bean 'upgradeManager' while setting bean property 'upgradeManager'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'upgradeManager' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'removeClassicThemeUpgradeTask' while setting bean property 'upgradeTasks' with key [2]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'removeClassicThemeUpgradeTask' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'spaceManager' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'spaceManager' defined in class path resource [applicationContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexManager' defined in class path resource [indexingSubsystemContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexTaskPerformer' defined in class path resource [indexingSubsystemContext.xml]: Cannot resolve reference to bean 'luceneConnection' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'luceneConnection' defined in class path resource [indexingSubsystemContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:480)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
	... 37 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'settingsManager' defined in class path resource [applicationContext.xml]: Cannot resolve reference to bean 'upgradeManager' while setting bean property 'upgradeManager'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'upgradeManager' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'removeClassicThemeUpgradeTask' while setting bean property 'upgradeTasks' with key [2]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'removeClassicThemeUpgradeTask' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'spaceManager' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'spaceManager' defined in class path resource [applicationContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexManager' defined in class path resource [indexingSubsystemContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexTaskPerformer' defined in class path resource [indexingSubsystemContext.xml]: Cannot resolve reference to bean 'luceneConnection' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'luceneConnection' defined in class path resource [indexingSubsystemContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:275)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:1029)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:977)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
	... 46 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'upgradeManager' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'removeClassicThemeUpgradeTask' while setting bean property 'upgradeTasks' with key [2]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'removeClassicThemeUpgradeTask' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'spaceManager' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'spaceManager' defined in class path resource [applicationContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexManager' defined in class path resource [indexingSubsystemContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexTaskPerformer' defined in class path resource [indexingSubsystemContext.xml]: Cannot resolve reference to bean 'luceneConnection' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'luceneConnection' defined in class path resource [indexingSubsystemContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:275)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveManagedList(BeanDefinitionValueResolver.java:287)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:126)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
	... 61 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'removeClassicThemeUpgradeTask' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'spaceManager' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'spaceManager' defined in class path resource [applicationContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexManager' defined in class path resource [indexingSubsystemContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexTaskPerformer' defined in class path resource [indexingSubsystemContext.xml]: Cannot resolve reference to bean 'luceneConnection' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'luceneConnection' defined in class path resource [indexingSubsystemContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:275)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
	at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:495)
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:162)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
	... 76 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'spaceManager' defined in class path resource [applicationContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexManager' defined in class path resource [indexingSubsystemContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexTaskPerformer' defined in class path resource [indexingSubsystemContext.xml]: Cannot resolve reference to bean 'luceneConnection' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'luceneConnection' defined in class path resource [indexingSubsystemContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:480)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
	... 91 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexManager' defined in class path resource [indexingSubsystemContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexTaskPerformer' defined in class path resource [indexingSubsystemContext.xml]: Cannot resolve reference to bean 'luceneConnection' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'luceneConnection' defined in class path resource [indexingSubsystemContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:480)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:1029)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:977)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
	... 100 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexTaskPerformer' defined in class path resource [indexingSubsystemContext.xml]: Cannot resolve reference to bean 'luceneConnection' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'luceneConnection' defined in class path resource [indexingSubsystemContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:275)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
	at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:495)
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:162)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:1029)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:977)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
	... 111 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'luceneConnection' defined in class path resource [indexingSubsystemContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:254)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
	... 128 more
Caused by: org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:115)
	at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:87)
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:248)
	... 140 more
Caused by: com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at com.atlassian.bonnie.LuceneConnection.createSearcher(LuceneConnection.java:487)
	at com.atlassian.bonnie.LuceneConnection.<init>(LuceneConnection.java:93)
	at com.atlassian.bonnie.LuceneConnection.<init>(LuceneConnection.java:108)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
	at java.lang.reflect.Constructor.newInstance(Unknown Source)
	at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:100)
	... 142 more
Caused by: java.io.IOException: read past EOF
	at org.apache.lucene.store.BufferedIndexInput.refill(BufferedIndexInput.java:151)
	at org.apache.lucene.store.BufferedIndexInput.readBytes(BufferedIndexInput.java:116)
	at org.apache.lucene.store.BufferedIndexInput.readBytes(BufferedIndexInput.java:92)
	at org.apache.lucene.store.ChecksumIndexInput.readBytes(ChecksumIndexInput.java:43)
	at org.apache.lucene.store.IndexInput.readString(IndexInput.java:123)
	at org.apache.lucene.index.SegmentInfo.<init>(SegmentInfo.java:174)
	at org.apache.lucene.index.SegmentInfos.read(SegmentInfos.java:256)
	at org.apache.lucene.index.DirectoryReader$1.doBody(DirectoryReader.java:76)
	at org.apache.lucene.index.SegmentInfos$FindSegmentsFile.run(SegmentInfos.java:683)
	at org.apache.lucene.index.DirectoryReader.open(DirectoryReader.java:73)
	at org.apache.lucene.index.IndexReader.open(IndexReader.java:476)
	at org.apache.lucene.index.IndexReader.open(IndexReader.java:300)
	at org.apache.lucene.search.IndexSearcher.<init>(IndexSearcher.java:87)
	at org.apache.lucene.search.DelayCloseIndexSearcher.<init>(DelayCloseIndexSearcher.java:87)
	at com.atlassian.bonnie.LuceneConnection.createSearcher(LuceneConnection.java:483)
	... 149 more
2014-04-12 08:59:50,319 ERROR [main] [atlassian.config.bootstrap.BootstrappedContextLoaderListener] contextInitialized Failed to initialize the main Confluence context
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'macroIconManager' defined in class path resource [services/pluginServiceContext.xml]: Cannot resolve reference to bean 'httpRetrievalService' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'httpRetrievalService' defined in class path resource [applicationContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'settingsManager' defined in class path resource [applicationContext.xml]: Cannot resolve reference to bean 'upgradeManager' while setting bean property 'upgradeManager'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'upgradeManager' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'removeClassicThemeUpgradeTask' while setting bean property 'upgradeTasks' with key [2]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'removeClassicThemeUpgradeTask' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'spaceManager' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'spaceManager' defined in class path resource [applicationContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexManager' defined in class path resource [indexingSubsystemContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexTaskPerformer' defined in class path resource [indexingSubsystemContext.xml]: Cannot resolve reference to bean 'luceneConnection' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'luceneConnection' defined in class path resource [indexingSubsystemContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:275)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
	at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:495)
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:162)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:429)
	at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:728)
	at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:380)
	at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:255)
	at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:199)
	at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:45)
	at com.atlassian.spring.container.ContainerContextLoaderListener.contextInitialized(ContainerContextLoaderListener.java:32)
	at com.atlassian.confluence.setup.ConfluenceBootstrappedContextLoaderListener.contextInitialized(ConfluenceBootstrappedContextLoaderListener.java:32)
	at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4206)
	at org.apache.catalina.core.StandardContext.start(StandardContext.java:4705)
	at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057)
	at org.apache.catalina.core.StandardHost.start(StandardHost.java:840)
	at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057)
	at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:463)
	at org.apache.catalina.core.StandardService.start(StandardService.java:525)
	at org.apache.catalina.core.StandardServer.start(StandardServer.java:754)
	at org.apache.catalina.startup.Catalina.start(Catalina.java:595)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
	at java.lang.reflect.Method.invoke(Unknown Source)
	at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289)
	at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414)
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'httpRetrievalService' defined in class path resource [applicationContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'settingsManager' defined in class path resource [applicationContext.xml]: Cannot resolve reference to bean 'upgradeManager' while setting bean property 'upgradeManager'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'upgradeManager' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'removeClassicThemeUpgradeTask' while setting bean property 'upgradeTasks' with key [2]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'removeClassicThemeUpgradeTask' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'spaceManager' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'spaceManager' defined in class path resource [applicationContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexManager' defined in class path resource [indexingSubsystemContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexTaskPerformer' defined in class path resource [indexingSubsystemContext.xml]: Cannot resolve reference to bean 'luceneConnection' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'luceneConnection' defined in class path resource [indexingSubsystemContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:480)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
	... 37 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'settingsManager' defined in class path resource [applicationContext.xml]: Cannot resolve reference to bean 'upgradeManager' while setting bean property 'upgradeManager'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'upgradeManager' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'removeClassicThemeUpgradeTask' while setting bean property 'upgradeTasks' with key [2]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'removeClassicThemeUpgradeTask' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'spaceManager' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'spaceManager' defined in class path resource [applicationContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexManager' defined in class path resource [indexingSubsystemContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexTaskPerformer' defined in class path resource [indexingSubsystemContext.xml]: Cannot resolve reference to bean 'luceneConnection' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'luceneConnection' defined in class path resource [indexingSubsystemContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:275)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:1029)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:977)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
	... 46 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'upgradeManager' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'removeClassicThemeUpgradeTask' while setting bean property 'upgradeTasks' with key [2]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'removeClassicThemeUpgradeTask' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'spaceManager' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'spaceManager' defined in class path resource [applicationContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexManager' defined in class path resource [indexingSubsystemContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexTaskPerformer' defined in class path resource [indexingSubsystemContext.xml]: Cannot resolve reference to bean 'luceneConnection' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'luceneConnection' defined in class path resource [indexingSubsystemContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:275)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveManagedList(BeanDefinitionValueResolver.java:287)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:126)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1245)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
	... 61 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'removeClassicThemeUpgradeTask' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'spaceManager' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'spaceManager' defined in class path resource [applicationContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexManager' defined in class path resource [indexingSubsystemContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexTaskPerformer' defined in class path resource [indexingSubsystemContext.xml]: Cannot resolve reference to bean 'luceneConnection' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'luceneConnection' defined in class path resource [indexingSubsystemContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:275)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
	at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:495)
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:162)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
	... 76 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'spaceManager' defined in class path resource [applicationContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexManager' defined in class path resource [indexingSubsystemContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexTaskPerformer' defined in class path resource [indexingSubsystemContext.xml]: Cannot resolve reference to bean 'luceneConnection' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'luceneConnection' defined in class path resource [indexingSubsystemContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:480)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
	... 91 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexManager' defined in class path resource [indexingSubsystemContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexTaskPerformer' defined in class path resource [indexingSubsystemContext.xml]: Cannot resolve reference to bean 'luceneConnection' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'luceneConnection' defined in class path resource [indexingSubsystemContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:480)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:1029)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:977)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
	... 100 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexTaskPerformer' defined in class path resource [indexingSubsystemContext.xml]: Cannot resolve reference to bean 'luceneConnection' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'luceneConnection' defined in class path resource [indexingSubsystemContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:275)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:104)
	at org.springframework.beans.factory.support.ConstructorResolver.resolveConstructorArguments(ConstructorResolver.java:495)
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:162)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireByName(AbstractAutowireCapableBeanFactory.java:1029)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:977)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
	... 111 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'luceneConnection' defined in class path resource [indexingSubsystemContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:254)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:925)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:835)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:440)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
	at java.security.AccessController.doPrivileged(Native Method)
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
	at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:269)
	... 128 more
Caused by: org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:115)
	at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:87)
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:248)
	... 140 more
Caused by: com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1
	at com.atlassian.bonnie.LuceneConnection.createSearcher(LuceneConnection.java:487)
	at com.atlassian.bonnie.LuceneConnection.<init>(LuceneConnection.java:93)
	at com.atlassian.bonnie.LuceneConnection.<init>(LuceneConnection.java:108)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
	at java.lang.reflect.Constructor.newInstance(Unknown Source)
	at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:100)
	... 142 more
Caused by: java.io.IOException: read past EOF
	at org.apache.lucene.store.BufferedIndexInput.refill(BufferedIndexInput.java:151)
	at org.apache.lucene.store.BufferedIndexInput.readBytes(BufferedIndexInput.java:116)
	at org.apache.lucene.store.BufferedIndexInput.readBytes(BufferedIndexInput.java:92)
	at org.apache.lucene.store.ChecksumIndexInput.readBytes(ChecksumIndexInput.java:43)
	at org.apache.lucene.store.IndexInput.readString(IndexInput.java:123)
	at org.apache.lucene.index.SegmentInfo.<init>(SegmentInfo.java:174)
	at org.apache.lucene.index.SegmentInfos.read(SegmentInfos.java:256)
	at org.apache.lucene.index.DirectoryReader$1.doBody(DirectoryReader.java:76)
	at org.apache.lucene.index.SegmentInfos$FindSegmentsFile.run(SegmentInfos.java:683)
	at org.apache.lucene.index.DirectoryReader.open(DirectoryReader.java:73)
	at org.apache.lucene.index.IndexReader.open(IndexReader.java:476)
	at org.apache.lucene.index.IndexReader.open(IndexReader.java:300)
	at org.apache.lucene.search.IndexSearcher.<init>(IndexSearcher.java:87)
	at org.apache.lucene.search.DelayCloseIndexSearcher.<init>(DelayCloseIndexSearcher.java:87)
	at com.atlassian.bonnie.LuceneConnection.createSearcher(LuceneConnection.java:483)
	... 149 more
2014-04-12 08:59:50,350 WARN [main] [atlassian.confluence.upgrade.UpgradeLauncherServletContextListener] contextInitialized Upgrades not attempted due to error in main spring context
2014-04-12 08:59:50,350 WARN [main] [atlassian.confluence.plugin.PluginFrameworkContextListener] contextInitialized Not starting full plugin system due to error in main spring context
2014-04-12 08:59:51,068 INFO [main] [com.atlassian.confluence.lifecycle] init Confluence is ready to serve
2014-04-12 08:59:51,239 ERROR [http-12331-1] [[Standalone].[localhost].[/confluence].[servlet-module-container-servlet]] log Servlet.service() for servlet servlet-module-container-servlet threw exception
com.atlassian.util.concurrent.LazyReference$InitializationException: java.lang.NullPointerException
	at com.atlassian.util.concurrent.LazyReference.getInterruptibly(LazyReference.java:149)
	at com.atlassian.util.concurrent.LazyReference.get(LazyReference.java:112)
	at com.atlassian.confluence.setup.ConfluenceEncodingFilter.getGlobalSettings(ConfluenceEncodingFilter.java:45)
	at com.atlassian.confluence.setup.ConfluenceEncodingFilter.getEncodingInternal(ConfluenceEncodingFilter.java:35)
	at com.atlassian.confluence.setup.ConfluenceEncodingFilter.getEncoding(ConfluenceEncodingFilter.java:27)
	at com.atlassian.core.filters.encoding.AbstractEncodingFilter.doFilter(AbstractEncodingFilter.java:38)
	at com.atlassian.core.filters.AbstractHttpFilter.doFilter(AbstractHttpFilter.java:31)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.core.filters.HeaderSanitisingFilter.doFilter(HeaderSanitisingFilter.java:44)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.confluence.servlet.FourOhFourErrorLoggingFilter.doFilter(FourOhFourErrorLoggingFilter.java:65)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293)
	at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:859)
	at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:602)
	at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489)
	at java.lang.Thread.run(Unknown Source)
Caused by: java.lang.NullPointerException
	at com.atlassian.spring.container.ContainerManager.getComponent(ContainerManager.java:33)
	at com.atlassian.confluence.util.LazyComponentReference$Accessor.get(LazyComponentReference.java:44)
	at com.atlassian.util.concurrent.Lazy$Strong.create(Lazy.java:85)
	at com.atlassian.util.concurrent.LazyReference$Sync.run(LazyReference.java:321)
	at com.atlassian.util.concurrent.LazyReference.getInterruptibly(LazyReference.java:143)
	... 24 more
2014-04-12 08:59:51,364 WARN [http-12331-1] [atlassian.confluence.status.SystemErrorInformationLogger] writeToLog No SystemInformationService could be retrieved from the Container.
2014-04-12 08:59:51,364 INFO [http-12331-1] [atlassian.confluence.status.SystemErrorInformationLogger] writeToLog 
Build Information: Can't retrieve build information - no SystemInformationService available.
--------------------------
Request Information
--------------------------
URL: http://some-host.some-domain:12331/confluence/500page.jsp
Scheme: http
Server: some-host.some-domain
Port: 12331
URI: /confluence/500page.jsp
Context Path: /confluence
Servlet Path: /500page.jsp
Path Info: null
Query String: local=true&use-accept-lang=true&maxResults=3
--------------------------
Attributes
--------------------------
javax.servlet.forward.request_uri: /confluence/plugins/servlet/streams
javax.servlet.forward.context_path: /confluence
javax.servlet.forward.servlet_path: /plugins/servlet
javax.servlet.forward.path_info: /500page.jsp
javax.servlet.forward.query_string: local=true&use-accept-lang=true&maxResults=3
os_securityfilter_already_filtered: true
javax.servlet.error.message: 
com.opensymphony.sitemesh.APPLIED_ONCE: true
atlassian.core.seraph.original.url: /500page.jsp?local=true&use-accept-lang=true&maxResults=3
com.atlassian.core.filters.HeaderSanitisingFilter_already_filtered: true
javax.servlet.error.status_code: 500
javax.servlet.error.servlet_name: servlet-module-container-servlet
javax.servlet.error.exception: com.atlassian.util.concurrent.LazyReference$InitializationException: java.lang.NullPointerException
javax.servlet.error.request_uri: /confluence/plugins/servlet/streams
loginfilter.already.filtered: true
--------------------------
Parameters
--------------------------
local : true
maxResults : 3
use-accept-lang : true
caused by: com.atlassian.util.concurrent.LazyReference$InitializationException: java.lang.NullPointerException
at com.atlassian.util.concurrent.LazyReference.getInterruptibly(LazyReference.java:149)
caused by: java.lang.NullPointerException
at com.atlassian.spring.container.ContainerManager.getComponent(ContainerManager.java:33)

2014-04-12 08:59:51,395 ERROR [http-12331-1] [ContainerBase.[Standalone].[localhost].[/confluence]] log Unhandled exception occurred whilst decorating page
java.lang.NullPointerException
	at com.atlassian.spring.container.ContainerManager.getComponent(ContainerManager.java:33)
	at com.atlassian.confluence.setup.sitemesh.PluginDecoratorMapper.getPluginAccessor(PluginDecoratorMapper.java:74)
	at com.atlassian.confluence.setup.sitemesh.PluginDecoratorMapper.getDecorator(PluginDecoratorMapper.java:23)
	at com.opensymphony.module.sitemesh.mapper.AbstractDecoratorMapper.getDecorator(AbstractDecoratorMapper.java:45)
	at com.opensymphony.module.sitemesh.mapper.InlineDecoratorMapper.getDecorator(InlineDecoratorMapper.java:41)
	at com.atlassian.confluence.util.profiling.ConfluenceDecoratorSelector.selectDecorator(ConfluenceDecoratorSelector.java:59)
	at com.opensymphony.sitemesh.webapp.SiteMeshFilter.doFilter(SiteMeshFilter.java:83)
	at com.atlassian.confluence.util.profiling.ProfilingPageFilter.doFilter(ProfilingPageFilter.java:44)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:71)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:63)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.seraph.filter.SecurityFilter.doFilter(SecurityFilter.java:211)
	at com.atlassian.confluence.web.filter.ConfluenceSecurityFilter.doFilter(ConfluenceSecurityFilter.java:28)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.seraph.filter.BaseLoginFilter.doFilter(BaseLoginFilter.java:150)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:71)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:63)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:71)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:63)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.confluence.web.filter.DebugFilter.doFilter(DebugFilter.java:44)
	at com.atlassian.core.filters.AbstractHttpFilter.doFilter(AbstractHttpFilter.java:31)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:646)
	at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:438)
	at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:374)
	at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:302)
	at org.apache.catalina.core.StandardHostValve.custom(StandardHostValve.java:421)
	at org.apache.catalina.core.StandardHostValve.status(StandardHostValve.java:342)
	at org.apache.catalina.core.StandardHostValve.throwable(StandardHostValve.java:286)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:141)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293)
	at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:859)
	at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:602)
	at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489)
	at java.lang.Thread.run(Unknown Source)
2014-04-12 08:59:51,395 ERROR [http-12331-1] [[Standalone].[localhost].[/confluence].[jsp]] log Servlet.service() for servlet jsp threw exception
java.lang.NullPointerException
	at com.atlassian.spring.container.ContainerManager.getComponent(ContainerManager.java:33)
	at com.atlassian.confluence.setup.sitemesh.PluginDecoratorMapper.getPluginAccessor(PluginDecoratorMapper.java:74)
	at com.atlassian.confluence.setup.sitemesh.PluginDecoratorMapper.getDecorator(PluginDecoratorMapper.java:23)
	at com.opensymphony.module.sitemesh.mapper.AbstractDecoratorMapper.getDecorator(AbstractDecoratorMapper.java:45)
	at com.opensymphony.module.sitemesh.mapper.InlineDecoratorMapper.getDecorator(InlineDecoratorMapper.java:41)
	at com.atlassian.confluence.util.profiling.ConfluenceDecoratorSelector.selectDecorator(ConfluenceDecoratorSelector.java:59)
	at com.opensymphony.sitemesh.webapp.SiteMeshFilter.doFilter(SiteMeshFilter.java:83)
	at com.atlassian.confluence.util.profiling.ProfilingPageFilter.doFilter(ProfilingPageFilter.java:44)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:71)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:63)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.seraph.filter.SecurityFilter.doFilter(SecurityFilter.java:211)
	at com.atlassian.confluence.web.filter.ConfluenceSecurityFilter.doFilter(ConfluenceSecurityFilter.java:28)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.seraph.filter.BaseLoginFilter.doFilter(BaseLoginFilter.java:150)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:71)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:63)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:71)
	at com.atlassian.plugin.servlet.filter.ServletFilterModuleContainerFilter.doFilter(ServletFilterModuleContainerFilter.java:63)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at com.atlassian.confluence.web.filter.DebugFilter.doFilter(DebugFilter.java:44)
	at com.atlassian.core.filters.AbstractHttpFilter.doFilter(AbstractHttpFilter.java:31)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
	at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:646)
	at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:438)
	at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:374)
	at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:302)
	at org.apache.catalina.core.StandardHostValve.custom(StandardHostValve.java:421)
	at org.apache.catalina.core.StandardHostValve.status(StandardHostValve.java:342)
	at org.apache.catalina.core.StandardHostValve.throwable(StandardHostValve.java:286)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:141)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293)
	at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:859)
	at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:602)
	at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489)
	at java.lang.Thread.run(Unknown Source)

I see from it that the "atlassian-bundled-plugins" file is missing, but if I add an empty folder with such name, i still get the same BEAN problem.

------------------------------------------------------------------------

Ok, I believe that this is the main problem:

ERROR [main] [springframework.web.context.ContextLoader] initWebApplicationContext Context initialization failed
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'macroIconManager' defined in class path resource [services/pluginServiceContext.xml]: Cannot resolve reference to bean 'httpRetrievalService' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'httpRetrievalService' defined in class path resource [applicationContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'settingsManager' defined in class path resource [applicationContext.xml]: Cannot resolve reference to bean 'upgradeManager' while setting bean property 'upgradeManager'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'upgradeManager' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'removeClassicThemeUpgradeTask' while setting bean property 'upgradeTasks' with key [2]; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'removeClassicThemeUpgradeTask' defined in class path resource [upgradeSubsystemContext.xml]: Cannot resolve reference to bean 'spaceManager' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'spaceManager' defined in class path resource [applicationContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexManager' defined in class path resource [indexingSubsystemContext.xml]: Initialization of bean failed; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'indexTaskPerformer' defined in class path resource [indexingSubsystemContext.xml]: Cannot resolve reference to bean 'luceneConnection' while setting constructor argument; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'luceneConnection' defined in class path resource [indexingSubsystemContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [com.atlassian.bonnie.LuceneConnection]: Constructor threw exception; nested exception is com.atlassian.bonnie.LuceneException: Failed to create searcher for directory: org.apache.lucene.store.SimpleFSDirectory@C:\Program Files\Atlassian\Application Data\Confluence\index lockFactory=org.apache.lucene.store.SimpleFSLockFactory@1b04f4a1

------------------------------------------------------------------------

I tried to run service using:

Atlassian\Confluence\bin>catalina.bat start -security

and got the following

apr 12, 2014 6:00:03 PM org.apache.tomcat.util.digester.SetPropertiesRule begin
WARNING: [SetPropertiesRule]{Server} Setting property 'debug' to '0' did not fin
d a matching property.
apr 12, 2014 6:00:03 PM org.apache.tomcat.util.digester.SetPropertiesRule begin
WARNING: [SetPropertiesRule]{Server/Service/Engine} Setting property 'debug' to
'0' did not find a matching property.
apr 12, 2014 6:00:03 PM org.apache.tomcat.util.digester.SetPropertiesRule begin
WARNING: [SetPropertiesRule]{Server/Service/Engine/Host} Setting property 'debug
' to '0' did not find a matching property.
apr 12, 2014 6:00:03 PM org.apache.tomcat.util.digester.SetPropertiesRule begin
WARNING: [SetPropertiesRule]{Server/Service/Engine/Host/Context} Setting propert
y 'debug' to '0' did not find a matching property.
apr 12, 2014 6:00:04 PM org.apache.coyote.http11.Http11Protocol init
INFO: Initializing Coyote HTTP/1.1 on http-12331
apr 12, 2014 6:00:04 PM org.apache.catalina.startup.Catalina load
INFO: Initialization processed in 424 ms
apr 12, 2014 6:00:04 PM org.apache.catalina.core.StandardService start
INFO: Starting service Tomcat-Standalone
apr 12, 2014 6:00:04 PM org.apache.catalina.core.StandardEngine start
INFO: Starting Servlet Engine: Apache Tomcat/6.0.35
2014-04-12 18:00:05,424 INFO [main] [com.atlassian.confluence.lifecycle] context
Initialized Starting Confluence 5.1.5 [build 4252 based on commit hash 6ac85e9b1
4675c5514a674e1aecae99c9505ed36]
2014-04-12 18:00:06,516 ERROR [main] [atlassian.confluence.setup.ConfluenceConfi
gurationListener] contextInitialized An error was encountered while bootstrappin
g Confluence (see below):
access denied ("java.util.PropertyPermission" "confluence.disableBeanTypeCache"
"read")
java.security.AccessControlException: access denied ("java.util.PropertyPermissi
on" "confluence.disableBeanTypeCache" "read")
        at java.security.AccessControlContext.checkPermission(Unknown Source)
        at java.security.AccessController.checkPermission(Unknown Source)
        at java.lang.SecurityManager.checkPermission(Unknown Source)
        at java.lang.SecurityManager.checkPropertyAccess(Unknown Source)
        at java.lang.System.getProperty(Unknown Source)
        at java.lang.Boolean.getBoolean(Unknown Source)
        at com.atlassian.confluence.setup.ConfluenceListableBeanFactory.getBeanN
amesForType(ConfluenceListableBeanFactory.java:162)
        at org.springframework.context.support.AbstractApplicationContext.invoke
BeanFactoryPostProcessors(AbstractApplicationContext.java:505)
        at org.springframework.context.support.AbstractApplicationContext.refres
h(AbstractApplicationContext.java:362)
        at com.atlassian.confluence.setup.ConfluenceClassPathXmlApplicationConte
xt.<init>(ConfluenceClassPathXmlApplicationContext.java:26)
        at com.atlassian.confluence.setup.ConfluenceConfigurationListener.initia
liseBootstrapContext(ConfluenceConfigurationListener.java:89)
        at com.atlassian.confluence.setup.ConfluenceConfigurationListener.contex
tInitialized(ConfluenceConfigurationListener.java:46)
        at org.apache.catalina.core.StandardContext.listenerStart(StandardContex
t.java:4206)
        at org.apache.catalina.core.StandardContext.start(StandardContext.java:4
705)
        at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057)

        at org.apache.catalina.core.StandardHost.start(StandardHost.java:840)
        at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057)

        at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:463
)
        at org.apache.catalina.core.StandardService.start(StandardService.java:5
25)
        at org.apache.catalina.core.StandardServer.start(StandardServer.java:754
)
        at org.apache.catalina.startup.Catalina.start(Catalina.java:595)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
        at java.lang.reflect.Method.invoke(Unknown Source)
        at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289)
        at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414)
2014-04-12 18:00:06,531 WARN [main] [atlassian.config.util.BootstrapUtils] getBo
otstrapManager Attempting to retrieve bootstrap manager before it is set up: com
.atlassian.config.bootstrap.BootstrappedContextLoaderListener.canInitialiseConta
iner(BootstrappedContextLoaderListener.java:24)
2014-04-12 18:00:06,547 ERROR [main] [ContainerBase.[Standalone].[localhost].[/c
onfluence]] log Exception sending context initialized event to listener instance
 of class com.atlassian.confluence.languages.ReloadBundlesContextListener
java.security.AccessControlException: access denied ("java.util.PropertyPermissi
on" "confluence.i18n.reloadbundles" "read")
        at java.security.AccessControlContext.checkPermission(Unknown Source)
        at java.security.AccessController.checkPermission(Unknown Source)
        at java.lang.SecurityManager.checkPermission(Unknown Source)
        at java.lang.SecurityManager.checkPropertyAccess(Unknown Source)
        at java.lang.System.getProperty(Unknown Source)
        at java.lang.Boolean.getBoolean(Unknown Source)
        at com.atlassian.confluence.languages.ReloadBundlesContextListener.conte
xtInitialized(ReloadBundlesContextListener.java:22)
        at org.apache.catalina.core.StandardContext.listenerStart(StandardContex
t.java:4206)
        at org.apache.catalina.core.StandardContext.start(StandardContext.java:4
705)
        at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057)

        at org.apache.catalina.core.StandardHost.start(StandardHost.java:840)
        at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057)

        at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:463
)
        at org.apache.catalina.core.StandardService.start(StandardService.java:5
25)
        at org.apache.catalina.core.StandardServer.start(StandardServer.java:754
)
        at org.apache.catalina.startup.Catalina.start(Catalina.java:595)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
        at java.lang.reflect.Method.invoke(Unknown Source)
        at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289)
        at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414)
2014-04-12 18:00:06,563 WARN [main] [atlassian.config.util.BootstrapUtils] getBo
otstrapManager Attempting to retrieve bootstrap manager before it is set up: com
.atlassian.confluence.setup.ValidLicenseContextListener.shouldRunListener(ValidL
icenseContextListener.java:50)
2014-04-12 18:00:06,563 WARN [main] [atlassian.config.util.BootstrapUtils] getBo
otstrapManager Attempting to retrieve bootstrap manager before it is set up: com
.atlassian.confluence.upgrade.UpgradeLauncherServletContextListener.contextIniti
alized(UpgradeLauncherServletContextListener.java:22)
2014-04-12 18:00:06,563 WARN [main] [atlassian.confluence.upgrade.UpgradeLaunche
rServletContextListener] contextInitialized Upgrades not attempted due to bootst
rap errors
2014-04-12 18:00:06,563 WARN [main] [atlassian.config.util.BootstrapUtils] getBo
otstrapManager Attempting to retrieve bootstrap manager before it is set up: com
.atlassian.confluence.plugin.PluginFrameworkContextListener.isDatabaseConfigured
(PluginFrameworkContextListener.java:74)
2014-04-12 18:00:06,563 ERROR [main] [ContainerBase.[Standalone].[localhost].[/c
onfluence]] log Exception sending context initialized event to listener instance
 of class com.atlassian.confluence.plugin.PluginFrameworkContextListener
java.lang.NullPointerException
        at com.atlassian.confluence.plugin.PluginFrameworkContextListener.isData
baseConfigured(PluginFrameworkContextListener.java:74)
        at com.atlassian.confluence.plugin.PluginFrameworkContextListener.contex
tInitialized(PluginFrameworkContextListener.java:34)
        at org.apache.catalina.core.StandardContext.listenerStart(StandardContex
t.java:4206)
        at org.apache.catalina.core.StandardContext.start(StandardContext.java:4
705)
        at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057)

        at org.apache.catalina.core.StandardHost.start(StandardHost.java:840)
        at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057)

        at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:463
)
        at org.apache.catalina.core.StandardService.start(StandardService.java:5
25)
        at org.apache.catalina.core.StandardServer.start(StandardServer.java:754
)
        at org.apache.catalina.startup.Catalina.start(Catalina.java:595)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
        at java.lang.reflect.Method.invoke(Unknown Source)
        at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289)
        at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414)
apr 12, 2014 6:00:06 PM org.apache.catalina.core.StandardContext start
SEVERE: Error listenerStart
apr 12, 2014 6:00:06 PM org.apache.catalina.core.StandardContext start
SEVERE: Context [/confluence] startup failed due to previous errors
2014-04-12 18:00:06,609 INFO [main] [com.atlassian.confluence.lifecycle] context
Destroyed Stopping Confluence
2014-04-12 18:00:06,609 ERROR [main] [ContainerBase.[Standalone].[localhost].[/c
onfluence]] log Exception sending context destroyed event to listener instance o
f class com.atlassian.confluence.setup.ConfluenceConfigurationListener
java.security.AccessControlException: access denied ("java.util.logging.LoggingP
ermission" "control")
        at java.security.AccessControlContext.checkPermission(Unknown Source)
        at java.security.AccessController.checkPermission(Unknown Source)
        at java.lang.SecurityManager.checkPermission(Unknown Source)
        at java.util.logging.LogManager.checkPermission(Unknown Source)
        at java.util.logging.Logger.checkPermission(Unknown Source)
        at java.util.logging.Logger.removeHandler(Unknown Source)
        at org.slf4j.bridge.SLF4JBridgeHandler.uninstall(SLF4JBridgeHandler.java
:131)
        at com.atlassian.confluence.setup.ConfluenceConfigurationListener.contex
tDestroyed(ConfluenceConfigurationListener.java:102)
        at org.apache.catalina.core.StandardContext.listenerStop(StandardContext
.java:4245)
        at org.apache.catalina.core.StandardContext.stop(StandardContext.java:48
86)
        at org.apache.catalina.core.StandardContext.start(StandardContext.java:4
750)
        at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057)

        at org.apache.catalina.core.StandardHost.start(StandardHost.java:840)
        at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057)

        at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:463
)
        at org.apache.catalina.core.StandardService.start(StandardService.java:5
25)
        at org.apache.catalina.core.StandardServer.start(StandardServer.java:754
)
        at org.apache.catalina.startup.Catalina.start(Catalina.java:595)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
        at java.lang.reflect.Method.invoke(Unknown Source)
        at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289)
        at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414)
apr 12, 2014 6:00:06 PM org.apache.catalina.loader.WebappClassLoader clearRefere
ncesJdbc
SEVERE: The web application [/confluence] registered the JDBC driver [org.hsqldb
.jdbc.JDBCDriver] but failed to unregister it when the web application was stopp
ed. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
apr 12, 2014 6:00:06 PM org.apache.catalina.loader.WebappClassLoader clearRefere
ncesJdbc
SEVERE: The web application [/confluence] registered the JDBC driver [com.mysql.
jdbc.Driver] but failed to unregister it when the web application was stopped. T
o prevent a memory leak, the JDBC Driver has been forcibly unregistered.
apr 12, 2014 6:00:06 PM org.apache.catalina.loader.WebappClassLoader clearRefere
ncesJdbc
SEVERE: The web application [/confluence] registered the JDBC driver [org.postgr
esql.Driver] but failed to unregister it when the web application was stopped. T
o prevent a memory leak, the JDBC Driver has been forcibly unregistered.
log4j:ERROR LogMananger.repositorySelector was null likely due to error in class
 reloading, using NOPLoggerRepository.
apr 12, 2014 6:00:07 PM org.apache.coyote.http11.Http11Protocol start
INFO: Starting Coyote HTTP/1.1 on http-12331
apr 12, 2014 6:00:07 PM org.apache.catalina.startup.Catalina start
INFO: Server startup in 3005 ms

------------------------------------------------------------------------------

Then I have changed all the grant permissions (may be not a good idea, but..) to:

grant {
	permission java.security.AllPermission;
};

Then all the ERRORS dissapeared when executing catalina.bat start -security but still getting the error "server id not found"

-------------------------------------------------------------------------------

After running the confluence in the foreground and stopping, i get the following errors: (which does not seem to be very nice..) Seems like this is a known issue that has no real solution yet and probably is not related to my issues (https://confluence.atlassian.com/pages/viewpage.action?pageId=218275753)

INFO: Stopping service Tomcat-Standalone
apr 12, 2014 6:23:53 PM org.apache.catalina.loader.WebappClassLoader clearRefere
ncesJdbc
SEVERE: The web application [/confluence] registered the JDBC driver [org.hsqldb
.jdbc.JDBCDriver] but failed to unregister it when the web application was stopp
ed. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
apr 12, 2014 6:23:53 PM org.apache.catalina.loader.WebappClassLoader clearRefere
ncesJdbc
SEVERE: The web application [/confluence] registered the JDBC driver [com.mysql.
jdbc.Driver] but failed to unregister it when the web application was stopped. T
o prevent a memory leak, the JDBC Driver has been forcibly unregistered.
apr 12, 2014 6:23:53 PM org.apache.catalina.loader.WebappClassLoader clearRefere
ncesJdbc
SEVERE: The web application [/confluence] registered the JDBC driver [org.postgr
esql.Driver] but failed to unregister it when the web application was stopped. T
o prevent a memory leak, the JDBC Driver has been forcibly unregistered.
apr 12, 2014 6:23:53 PM org.apache.catalina.loader.WebappClassLoader clearRefere
ncesJdbc
SEVERE: The web application [/confluence] registered the JDBC driver [net.source
forge.jtds.jdbc.Driver] but failed to unregister it when the web application was
 stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregister
ed.
apr 12, 2014 6:23:53 PM org.apache.catalina.loader.WebappClassLoader clearThread
LocalMap
SEVERE: The web application [/confluence] created a ThreadLocal with key of type
 [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@7ff79fae]) and a value of
 type [org.dom4j.DocumentFactory] (value [org.dom4j.DocumentFactory@5a149a24]) b
ut failed to remove it when the web application was stopped. This is very likely
 to create a memory leak.
apr 12, 2014 6:23:53 PM org.apache.catalina.loader.WebappClassLoader clearThread
LocalMap
SEVERE: The web application [/confluence] created a ThreadLocal with key of type
 [org.apache.log4j.helpers.ThreadLocalMap] (value [org.apache.log4j.helpers.Thre
adLocalMap@7e93dfaf]) and a value of type [java.util.Hashtable] (value [{}]) but
 failed to remove it when the web application was stopped. This is very likely t
o create a memory leak.
log4j:ERROR LogMananger.repositorySelector was null likely due to error in class
 reloading, using NOPLoggerRepository.
apr 12, 2014 6:23:54 PM org.apache.coyote.http11.Http11Protocol destroy
INFO: Stopping Coyote HTTP/1.1 on http-12331
Terminate batch job (Y/N)?

Boris18

So I cannot really tell what the problem is based on the log messages. I have tried uninstalling, installing again, still the same. Jira runs normally thou.
Confluence runs (ran before) on

domain.com:12331/confluence

with underlying

tomcat6