For some reason my Jira stopped working and isn't starting up anymore.
This is the Catalina.out file:
08-May-2019 14:49:26.196 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"]
08-May-2019 14:49:26.209 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 1404 ms
08-May-2019 14:49:26.221 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]
08-May-2019 14:49:26.221 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/8.5.32
08-May-2019 14:49:26.235 SEVERE [Catalina-startStop-1] org.apache.catalina.startup.HostConfig.beforeStart Unable to create directory for deployment: [/opt/atlassian/jira/conf/Catalina/localhost]
08-May-2019 14:52:36.352 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version: Apache Tomcat/8.5.32
08-May-2019 14:52:36.379 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Jun 20 2018 19:50:35 UTC
08-May-2019 14:52:36.379 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server number: 8.5.32.0
08-May-2019 14:52:36.379 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux
08-May-2019 14:52:36.379 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 3.10.0-229.el7.x86_64
08-May-2019 14:52:36.379 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: amd64
08-May-2019 14:52:36.379 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /opt/atlassian/jira/jre
08-May-2019 14:52:36.380 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 1.8.0_181-b13
08-May-2019 14:52:36.380 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation
08-May-2019 14:52:36.380 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /opt/atlassian/jira
08-May-2019 14:52:36.380 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /opt/atlassian/jira
08-May-2019 14:52:36.380 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/opt/atlassian/jira/conf/logging.properties
08-May-2019 14:52:36.380 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
08-May-2019 14:52:36.380 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xms384m
08-May-2019 14:52:36.380 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xmx1023m
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:InitialCodeCacheSize=32m
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:ReservedCodeCacheSize=512m
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.awt.headless=true
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Datlassian.standalone=JIRA
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dorg.apache.jasper.runtime.BodyContentImpl.LIMIT_BUFFER=true
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dmail.mime.decodeparameters=true
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dorg.dom4j.factory=com.atlassian.core.xml.InterningDocumentFactory
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:-OmitStackTraceInFastThrow
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.locale.providers=COMPAT
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djdk.tls.ephemeralDHKeySize=2048
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.protocol.handler.pkgs=org.apache.catalina.webresources
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dorg.apache.catalina.security.SecurityListener.UMASK=0027
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xloggc:/opt/atlassian/jira/logs/atlassian-jira-gc-%t.log
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:+UseGCLogFileRotation
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:NumberOfGCLogFiles=5
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:GCLogFileSize=20M
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:+PrintGCDetails
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:+PrintGCDateStamps
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:+PrintGCTimeStamps
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:+PrintGCCause
08-May-2019 14:52:36.383 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dignore.endorsed.dirs=
08-May-2019 14:52:36.383 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/opt/atlassian/jira
08-May-2019 14:52:36.383 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/opt/atlassian/jira
08-May-2019 14:52:36.383 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/opt/atlassian/jira/temp
08-May-2019 14:52:36.383 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: [/usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib]
08-May-2019 14:52:37.105 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"]
08-May-2019 14:52:37.124 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 2229 ms
08-May-2019 14:52:37.158 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]
08-May-2019 14:52:37.158 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/8.5.32
08-May-2019 14:52:37.185 SEVERE [Catalina-startStop-1] org.apache.catalina.startup.HostConfig.beforeStart Unable to create directory for deployment: [/opt/atlassian/jira/conf/Catalina/localhost]
Looks like here is something wrong.. But what and how to debug/fix this?
Other files recently changed in /opt/atlassian/jira/logs:
atlassian-jira-gc-2019-05-08_14-52-33.log.0.current
Java HotSpot(TM) 64-Bit Server VM (25.181-b13) for linux-amd64 JRE (1.8.0_181-b13), built on Jul 7 2018 00:56:38 by "java_re" with gcc 4.3.0 20080428 (Red Hat 4.3.0-8)
Memory: 4k page, physical 5794984k(5344612k free), swap 630780k(630780k free)
CommandLine flags: -XX:GCLogFileSize=20971520 -XX:InitialCodeCacheSize=33554432 -XX:InitialHeapSize=402653184 -XX:MaxHeapSize=1072693248 -XX:NumberOfGCLogFiles=5 -XX:-OmitStackTraceInFastThrow -XX:+PrintGC -XX:+PrintGCCause -XX:+PrintGCDateStamps -XX:+PrintGCDetails -XX:+PrintGCTimeStamps -XX:ReservedCodeCacheSize=536870912 -XX:+UseCompressedClassPointers -XX:+UseCompressedOops -XX:+UseGCLogFileRotation -XX:+UseParallelGC
2019-05-08T14:52:40.982+0200: 7.871: [GC (Allocation Failure) [PSYoungGen: 98304K->11638K(114688K)] 98304K->11718K(376832K), 0.0206140 secs] [Times: user=0.03 sys=0.01, real=0.01 secs]
catalina.2019-05-08.log
...
08-May-2019 14:49:25.899 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: [/usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib]
08-May-2019 14:49:26.196 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"]
08-May-2019 14:49:26.209 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 1404 ms
08-May-2019 14:49:26.221 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]
08-May-2019 14:49:26.221 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/8.5.32
08-May-2019 14:49:26.235 SEVERE [Catalina-startStop-1] org.apache.catalina.startup.HostConfig.beforeStart Unable to create directory for deployment: [/opt/atlassian/jira/conf/Catalina/localhost]
08-May-2019 14:52:36.352 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version: Apache Tomcat/8.5.32
08-May-2019 14:52:36.379 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Jun 20 2018 19:50:35 UTC
08-May-2019 14:52:36.379 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server number: 8.5.32.0
08-May-2019 14:52:36.379 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux
08-May-2019 14:52:36.379 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 3.10.0-229.el7.x86_64
08-May-2019 14:52:36.379 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: amd64
08-May-2019 14:52:36.379 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /opt/atlassian/jira/jre
08-May-2019 14:52:36.380 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 1.8.0_181-b13
08-May-2019 14:52:36.380 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation
08-May-2019 14:52:36.380 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /opt/atlassian/jira
08-May-2019 14:52:36.380 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /opt/atlassian/jira
08-May-2019 14:52:36.380 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/opt/atlassian/jira/conf/logging.properties
08-May-2019 14:52:36.380 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
08-May-2019 14:52:36.380 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xms384m
08-May-2019 14:52:36.380 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xmx1023m
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:InitialCodeCacheSize=32m
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:ReservedCodeCacheSize=512m
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.awt.headless=true
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Datlassian.standalone=JIRA
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dorg.apache.jasper.runtime.BodyContentImpl.LIMIT_BUFFER=true
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dmail.mime.decodeparameters=true
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dorg.dom4j.factory=com.atlassian.core.xml.InterningDocumentFactory
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:-OmitStackTraceInFastThrow
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.locale.providers=COMPAT
08-May-2019 14:52:36.381 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djdk.tls.ephemeralDHKeySize=2048
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.protocol.handler.pkgs=org.apache.catalina.webresources
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dorg.apache.catalina.security.SecurityListener.UMASK=0027
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xloggc:/opt/atlassian/jira/logs/atlassian-jira-gc-%t.log
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:+UseGCLogFileRotation
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:NumberOfGCLogFiles=5
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:GCLogFileSize=20M
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:+PrintGCDetails
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:+PrintGCDateStamps
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:+PrintGCTimeStamps
08-May-2019 14:52:36.382 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -XX:+PrintGCCause
08-May-2019 14:52:36.383 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dignore.endorsed.dirs=
08-May-2019 14:52:36.383 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/opt/atlassian/jira
08-May-2019 14:52:36.383 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/opt/atlassian/jira
08-May-2019 14:52:36.383 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/opt/atlassian/jira/temp
08-May-2019 14:52:36.383 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: [/usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib]
08-May-2019 14:52:37.105 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"]
08-May-2019 14:52:37.124 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 2229 ms
08-May-2019 14:52:37.158 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina]
08-May-2019 14:52:37.158 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/8.5.32
08-May-2019 14:52:37.185 SEVERE [Catalina-startStop-1] org.apache.catalina.startup.HostConfig.beforeStart Unable to create directory for deployment: [/opt/atlassian/jira/conf/Catalina/localhost]
