So I have had this hapeen in both situations listed above. So today I upgraded Bamboo from 3.4.3 to 4.0.1. I also upgraded the the remote agents with the 4.0.1 jar file. When I bring the build servers back online I get the following...
Pre-Upgrade build.server (1) All custom capabilities setup.
Post-Upgrade build.server (2) I lose all custom executables, if I try to edit the name it tells me the name already exists.
Major PITA when you have ten build servers with multiple custom executables. Is there a work around for this??