Edit: apparently we have figured this out. It seems like some of my users when they want to make boards for just their dept. (boards only for marketing for example), they seem to be put into the position of making them like it's a whole new company. My opinion is that our users should not be accidentally made to make these boards outside of our organization, it is way too confusing. When they do this, trello thinks they have made a new company that does not have business class. So I am working with them to fix this. Not sure if the boards can be copied over to where they belong. But this has been happening to multiple users.