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GitHub repo shows in the Code section but still when I create a task it shows me that I can finish connecting GitHub even though I know I already connected it!!
Welcome to the community. This is Majid @ Exalate.
Let us do the basics first i.e. drop your connection and re-create it from scratch maybe. It is hard to pinpoint what the issue can be here, but seems like it was a brand new connection anyway - so, nothing to lose. You might also want to look at integration apps in the marketplace, like Exalate.
Hope it helps.