Hi David,
I don't think this is currently possible. I had a thought that you could maybe restrict the Trello user in JIRA to only access certain projects, but didn't come up with any positive results on that test.
Thanks Meg, I ended up restricting permissions for the JIRA user associated with the Trello board to a single project and that met my needs.
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Well, at least I was on the right path :) Glad you've got it figured out.
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