Got email about the security problem so i updated
The error do happen.
An unexpected error occurred. Please refer to the logs for more information.
The JIRA server could not be contacted. This may be a temporary glitch or the server may be down.
What log should i look at? not sure if this is even critical since the update is happening.
The update of the plugin do happen
Based on the date of your post, I am guessing you are talking about Greenhopper and the security advisory that was sent out.
I recently had the same issue with my Greenhopper 6.0.1 plugin. I found a reference to this article:
As the article mentions you would look at the atlassian-jira.log to confirm, but at this time, the workaround is to restart jira.
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