Jamie - After upgrading the ScriptRunner add-on, we got "cannot invoke method getJqlFunction() on null object" errors in plan/work mode on serveral of our Agile boards. I tracked things down to color coding queries on those boards:
Seems these JQL's no longer work for us. In search mode also getting errors: "Unable to find JQL function 'hasLinks(is blocked by)'."
ScriptRunner v2.1.16 w JIRA v6.1.5 - compatibility issues? Time to upgrade our instance to 6.2.x?
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