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i have a h5 file and i want to read its data in my java program. first of all, i import the sis-jhdf5-batteries_included.jar to my project, then, i use the follow code to read a dataset:
IHDF5Reader reader=HDF5Factory.openForReading(h5filepath); reader.int16().readArray("/REF/DataSet_1000_1"); reader.close();
unfortunatly, when i run the program, it thorws out an exception:
in thread "main" ncsa.hdf.hdf5lib.exceptions.HDF5LibraryException: Plugin for dynamically loaded library:Can't open directory or file ["H5PL.c line 402 in H5PL__find(): can't open directory"] at ch.systemsx.cisd.hdf5.hdf5lib.H5.H5Dread(Native Method) at ch.systemsx.cisd.hdf5.hdf5lib.H5D.H5Dread(H5D.java:381) at ch.systemsx.cisd.hdf5.HDF5.readDataSet(HDF5.java:944) at ch.systemsx.cisd.hdf5.HDF5ShortReader.readShortArray(HDF5ShortReader.java:199) at ch.systemsx.cisd.hdf5.HDF5ShortReader.access$1(HDF5ShortReader.java:192) at ch.systemsx.cisd.hdf5.HDF5ShortReader$5.call(HDF5ShortReader.java:186) at ch.systemsx.cisd.hdf5.HDF5ShortReader$5.call(HDF5ShortReader.java:1) at ch.systemsx.cisd.hdf5.cleanup.CleanUpCallable.call(CleanUpCallable.java:40) at ch.systemsx.cisd.hdf5.HDF5ShortReader.readArray(HDF5ShortReader.java:189) at VariableTest.main(VariableTest.java:24)
i don't know how to solve this problem, anyone can help me?
the h5 file's data format like this ( use hdfview to open it ):
when i double click on the DataSet_1000_1, the same exception happens:
the DataSet_1000_1 in fact is a 2D image (1200*1200)
any answer will be appreciated, thanks in advance!
Community moderators have prevented the ability to post new answers.
Could you explain what this has to do with Atlassian applications?
Nothing then, I think you're in the wrong place.
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