When you link Jira 6.x to confluence 5.x you can configure more than one application link type.
It is possible to configure all three linktypes at the same time.
What happens, which link type is used, when confluence and jira exchange data and all the three types are configured?
I think you can see which type is configured in Jira 5.x and Confluence 4 (and early 5 versions). But the view changed, compared with the newer Jira and Confluence versions
You will find the documention for the applink 4.0 here: https://confluence.atlassian.com/display/APPLINKS/Application+Links+Documentation
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