You would need the script runner pluggin:
and with it you would be able to query like this :
project = <project name> AND issueFunction in hasLinkType(<linktype eg. Duplicate>)
When you say filter issues, you mean filter and visualize them in the issue navigator? If so, you have this options in the issue navigator itself, like you can see in the image below.
Screen Shot 2015-02-25 at 4.21.38 PM.png
Or you can use the advanced mode and run a query like:
project = <PROJECT_KEY> and status = "<STATUS_NAME>"
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