atlas-run returning exceptions

[FlipThisHouse2]

I get a lot of exceptions when running atlas-run. I am running this on Windows and I am following the tutorial for making an hello world plug-in. 

most of the errors are files missing in the tomcat folder, I am copying one of the errors here. Any help would be appreciated. 

[INFO] [talledLocalContainer] Jan 15, 2018 12:37:16 PM org.apache.tomcat.util.scan.StandardJarScanner scan
[WARNING] [talledLocalContainer] WARNING: Failed to scan [file:/C:/Applications/Atlassian/atlassian-plugin-sdk-6.3.6/bin/myPlugin/target/container/tomcat8x/cargo-jira-home/common/lib/p6psy.jar] from classloader hierarchy
[INFO] [talledLocalContainer] java.nio.file.NoSuchFileException: C:\Applications\Atlassian\atlassian-plugin-sdk-6.3.6\bin\myPlugin\target\container\tomcat8x\cargo-jira-home\common\lib\p6psy.jar
[INFO] [talledLocalContainer] at java.base/sun.nio.fs.WindowsException.translateToIOException(WindowsException.java:85)
[INFO] [talledLocalContainer] at java.base/sun.nio.fs.WindowsException.rethrowAsIOException(WindowsException.java:103)
[INFO] [talledLocalContainer] at java.base/sun.nio.fs.WindowsException.rethrowAsIOException(WindowsException.java:108)
[INFO] [talledLocalContainer] at java.base/sun.nio.fs.WindowsFileAttributeViews$Basic.readAttributes(WindowsFileAttributeViews.java:53)
[INFO] [talledLocalContainer] at java.base/sun.nio.fs.WindowsFileAttributeViews$Basic.readAttributes(WindowsFileAttributeViews.java:38)
[INFO] [talledLocalContainer] at java.base/sun.nio.fs.WindowsFileSystemProvider.readAttributes(WindowsFileSystemProvider.java:194)
[INFO] [talledLocalContainer] at java.base/java.nio.file.Files.readAttributes(Files.java:1755)
[INFO] [talledLocalContainer] at java.base/java.util.zip.ZipFile$Source.get(ZipFile.java:951)
[INFO] [talledLocalContainer] at java.base/java.util.zip.ZipFile.<init>(ZipFile.java:216)
[INFO] [talledLocalContainer] at java.base/java.util.zip.ZipFile.<init>(ZipFile.java:148)
[INFO] [talledLocalContainer] at java.base/java.util.jar.JarFile.<init>(JarFile.java:324)
[INFO] [talledLocalContainer] at java.base/java.util.jar.JarFile.<init>(JarFile.java:295)
[INFO] [talledLocalContainer] at java.base/java.util.jar.JarFile.<init>(JarFile.java:261)
[INFO] [talledLocalContainer] at org.apache.tomcat.util.scan.JarFileUrlJar.<init>(JarFileUrlJar.java:60)
[INFO] [talledLocalContainer] at org.apache.tomcat.util.scan.JarFactory.newInstance(JarFactory.java:48)
[INFO] [talledLocalContainer] at org.apache.tomcat.util.scan.StandardJarScanner.process(StandardJarScanner.java:338)
[INFO] [talledLocalContainer] at org.apache.tomcat.util.scan.StandardJarScanner.scan(StandardJarScanner.java:288)
[INFO] [talledLocalContainer] at org.apache.jasper.servlet.TldScanner.scanJars(TldScanner.java:262)
[INFO] [talledLocalContainer] at org.apache.jasper.servlet.TldScanner.scan(TldScanner.java:104)
[INFO] [talledLocalContainer] at org.apache.jasper.servlet.JasperInitializer.onStartup(JasperInitializer.java:101)
[INFO] [talledLocalContainer] at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5178)
[INFO] [talledLocalContainer] at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
[INFO] [talledLocalContainer] at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:724)
[INFO] [talledLocalContainer] at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:700)
[INFO] [talledLocalContainer] at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:734)
[INFO] [talledLocalContainer] at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:1107)
[INFO] [talledLocalContainer] at org.apache.catalina.startup.HostConfig$DeployDirectory.run(HostConfig.java:1841)
[INFO] [talledLocalContainer] at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:514)
[INFO] [talledLocalContainer] at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
[INFO] [talledLocalContainer] at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1167)
[INFO] [talledLocalContainer] at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:641)
[INFO] [talledLocalContainer] at java.base/java.lang.Thread.run(Thread.java:844)

[Andrew S]

The correct link for this issue is AMPS-1429.

Although these warnings can safely be ignored, I totally agree that they make the plugin developer's life unpleasant. I'm not on the team that maintains this code, but I'm going to see if I can fix it in my innovation time, because it bites me too.

[Timothy]

Please check what version of Tomcat the SDK runs against the Jira version.

• https://ecosystem.atlassian.net/browse/AMPS-1294

You can also check the supported platform's page for Jira and check which Tomcat it supports.

[FlipThisHouse2]

I am going to try some of the suggestions in the bug report (thank you for sending it to me). However, I am following this article 

https://developer.atlassian.com/server/framework/atlassian-sdk/create-a-helloworld-plugin-project/

tomcat seems to be installed as part of the batch file. 

With the latest version of the SDK (6.3.6), and Jira, following the instructions in this article doesn't work. Shouldn't the article be updated? or is there a correction somewhere?

[Timothy]

With the latest version of the SDK (6.3.6), and Jira, following the instructions in this article doesn't work. Shouldn't the article be updated? or is there a correction somewhere?

The answer would probably be no.

You could always submit a pull request though.

[FlipThisHouse2]

I am trying to figure out if the documentation is wrong or if it’s something with my environment. Did anyone else got this tutorial working. All my attempts to make this work failed. 

Just want to get hello world plugin and be able to debug it. 

[See Xianyang]

I have the same problem too, hope anyone can help.

[Hua Soon SIM _Akeles_]

This is a warning caused by Jar manifest scan is enabled by default in Tomcat 8.

The details and workaround is available at 

https://confluence.atlassian.com/jirakb/jira-throws-java-io-filenotfoundexception-warnings-after-upgrade-869007981.html