Upgrading Jira 5.2 -> 6.0.6 32-bit "JIRA Startup Failed"

[James D]

After upgrading a working 32-bit 5.2 system to 32-bit 6.0.6 Jira will no longer start and is complaining about plugins not having been started. Screenshot attached and example from log file below:

2013-08-13 15:06:13,240 Timer-0 ERROR [internal.dependencies.startup.DependencyWaiterApplicationContextExecutor] Unable to create application context for [com.atlassian.administration.atlassian-admin-quicksearch-jira], unsatisfied dependencies: Dependency on [(objectClass=com.atlassian.sal.api.net.RequestFactory)] (from bean [&sal-request-factory-import])

org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.administration.atlassian-admin-quicksearch-jira' has timed out

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)

at java.util.TimerThread.mainLoop(Unknown Source)

at java.util.TimerThread.run(Unknown Source)

2013-08-13 15:06:13,412 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Never resolved service '&sal-request-factory-import' for plugin 'com.atlassian.administration.atlassian-admin-quicksearch-jira' with filter (objectClass=com.atlassian.sal.api.net.RequestFactory)

2013-08-13 15:06:13,412 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Unable to start the plugin container for plugin com.atlassian.administration.atlassian-admin-quicksearch-jira

org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.administration.atlassian-admin-quicksearch-jira' has timed out

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)

at java.util.TimerThread.mainLoop(Unknown Source)

at java.util.TimerThread.run(Unknown Source)

2013-08-13 15:06:13,412 Timer-0 ERROR [extender.internal.activator.ContextLoaderListener] Application context refresh failed (NonValidatingOsgiBundleXmlApplicationContext(bundle=com.atlassian.administration.atlassian-admin-quicksearch-jira, config=osgibundle:/META-INF/spring/*.xml))

org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.administration.atlassian-admin-quicksearch-jira' has timed out

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)

at java.util.TimerThread.mainLoop(Unknown Source)

at java.util.TimerThread.run(Unknown Source)

2013-08-13 15:06:13,412 Timer-0 WARN [internal.dependencies.startup.DependencyWaiterApplicationContextExecutor] Timeout occurred before finding service dependencies for [NonValidatingOsgiBundleXmlApplicationContext(bundle=com.atlassian.applinks.plugin, config=osgibundle:/META-INF/spring/*.xml)]

2013-08-13 15:06:13,412 Timer-0 ERROR [internal.dependencies.startup.DependencyWaiterApplicationContextExecutor] Unable to create application context for [com.atlassian.applinks.plugin], unsatisfied dependencies: Dependency on [(objectClass=com.atlassian.plugins.rest.common.util.RestUrlBuilder)] (from bean [&restUrlBuilder]), Dependency on [(objectClass=com.atlassian.sal.api.net.RequestFactory)] (from bean [&requestFactory]), Dependency on [(objectClass=com.atlassian.plugins.rest.common.json.JaxbJsonMarshaller)] (from bean [&jaxbJsonMarshaller])

org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.applinks.plugin' has timed out

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)

at java.util.TimerThread.mainLoop(Unknown Source)

at java.util.TimerThread.run(Unknown Source)

2013-08-13 15:06:13,412 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Never resolved service '&restUrlBuilder' for plugin 'com.atlassian.applinks.applinks-plugin' with filter (objectClass=com.atlassian.plugins.rest.common.util.RestUrlBuilder)

2013-08-13 15:06:13,412 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Never resolved service '&requestFactory' for plugin 'com.atlassian.applinks.applinks-plugin' with filter (objectClass=com.atlassian.sal.api.net.RequestFactory)

2013-08-13 15:06:13,412 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Never resolved service '&jaxbJsonMarshaller' for plugin 'com.atlassian.applinks.applinks-plugin' with filter (objectClass=com.atlassian.plugins.rest.common.json.JaxbJsonMarshaller)

2013-08-13 15:06:13,412 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Unable to start the plugin container for plugin com.atlassian.applinks.applinks-plugin

org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.applinks.plugin' has timed out

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)

at java.util.TimerThread.mainLoop(Unknown Source)

at java.util.TimerThread.run(Unknown Source)

2013-08-13 15:06:13,412 Timer-0 ERROR [extender.internal.activator.ContextLoaderListener] Application context refresh failed (NonValidatingOsgiBundleXmlApplicationContext(bundle=com.atlassian.applinks.plugin, config=osgibundle:/META-INF/spring/*.xml))

org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.applinks.plugin' has timed out

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)

at java.util.TimerThread.mainLoop(Unknown Source)

at java.util.TimerThread.run(Unknown Source)

2013-08-13 15:06:13,412 Timer-0 WARN [internal.dependencies.startup.DependencyWaiterApplicationContextExecutor] Timeout occurred before finding service dependencies for [NonValidatingOsgiBundleXmlApplicationContext(bundle=com.atlassian.gadgets.dashboard, config=osgibundle:/META-INF/spring/*.xml)]

2013-08-13 15:06:13,474 Timer-0 ERROR [internal.dependencies.startup.DependencyWaiterApplicationContextExecutor] Unable to create application context for [com.atlassian.gadgets.dashboard], unsatisfied dependencies: Dependency on [(objectClass=com.atlassian.gadgets.GadgetSpecUrlChecker)] (from bean [&gadgetSpecUrlChecker]), Dependency on [(objectClass=com.atlassian.gadgets.spec.GadgetSpecFactory)] (from bean [&gadgetSpecFactory]), Dependency on [(objectClass=com.atlassian.gadgets.view.GadgetViewFactory)] (from bean [&gadgetViewFactory]), Dependency on [(objectClass=com.atlassian.gadgets.view.RenderedGadgetUriBuilder)] (from bean [&renderedGadgetUriBuilder]), Dependency on [(objectClass=com.atlassian.gadgets.GadgetRequestContextFactory)] (from bean [&gadgetRequestContextFactory])

org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.gadgets.dashboard' has timed out

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)

at java.util.TimerThread.mainLoop(Unknown Source)

at java.util.TimerThread.run(Unknown Source)

2013-08-13 15:06:13,474 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Never resolved service '&gadgetSpecUrlChecker' for plugin 'com.atlassian.gadgets.dashboard' with filter (objectClass=com.atlassian.gadgets.GadgetSpecUrlChecker)

2013-08-13 15:06:13,474 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Never resolved service '&gadgetSpecFactory' for plugin 'com.atlassian.gadgets.dashboard' with filter (objectClass=com.atlassian.gadgets.spec.GadgetSpecFactory)

2013-08-13 15:06:13,474 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Never resolved service '&gadgetViewFactory' for plugin 'com.atlassian.gadgets.dashboard' with filter (objectClass=com.atlassian.gadgets.view.GadgetViewFactory)

2013-08-13 15:06:13,474 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Never resolved service '&renderedGadgetUriBuilder' for plugin 'com.atlassian.gadgets.dashboard' with filter (objectClass=com.atlassian.gadgets.view.RenderedGadgetUriBuilder)

2013-08-13 15:06:13,474 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Never resolved service '&gadgetRequestContextFactory' for plugin 'com.atlassian.gadgets.dashboard' with filter (objectClass=com.atlassian.gadgets.GadgetRequestContextFactory)

2013-08-13 15:06:13,474 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Unable to start the plugin container for plugin com.atlassian.gadgets.dashboard

org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.gadgets.dashboard' has timed out

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)

at java.util.TimerThread.mainLoop(Unknown Source)

at java.util.TimerThread.run(Unknown Source)

2013-08-13 15:06:13,474 Timer-0 ERROR [extender.internal.activator.ContextLoaderListener] Application context refresh failed (NonValidatingOsgiBundleXmlApplicationContext(bundle=com.atlassian.gadgets.dashboard, config=osgibundle:/META-INF/spring/*.xml))

org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.gadgets.dashboard' has timed out

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)

at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)

at java.util.TimerThread.mainLoop(Unknown Source)

at java.util.TimerThread.run(Unknown Source)

2013-08-13 15:06:13,474 Timer-0 WARN [internal.dependencies.startup.DependencyWaiterApplicationContextExecutor] Timeout occurred before finding service dependencies for [NonValidatingOsgiBundleXmlApplicationContext(bundle=com.atlassian.gadgets.embedded, config=osgibundle:/META-INF/spring/*.xml)]

[Felipevsw · Accepted solution]

Hi!

I believe this is due to the timeout time of the plugins.

Please, follow the instructions here to correct this: https://confluence.atlassian.com/display/JIRAKB/JIRA+System+Plugin+Timeout+While+Waiting+for+Plugins+to+Enable

[James D]

Thank you Felipe - this did the trick. My test server is a bit underpowered...