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Upgrading JIRA from 5.0.7 to 5.1: An error occurred performing JIRA upgrade

Yuri Leikind
Yuri Leikind July 12, 2012

About the system:

$ mysql --version

mysql Ver 14.12 Distrib 5.0.96, for debian-linux-gnu (x86_64) using readline 5.2

$ uname -a

Linux ns363662.ovh.net 2.6.34.6-xxxx-grs-ipv6-64 #3 SMP Fri Sep 17 16:06:38 UTC 2010 x86_64 GNU/Linux

After upgrading JIRA from 5.0.7 to 5.1 with the binary installer this is what I see on the first start of the application:

An error occurred performing JIRA upgrade

Exception thrown during upgrade: java.util.concurrent.ExecutionException: com.atlassian.util.concurrent.LazyReference$InitializationException: com.atlassian.util.concurrent.LazyReference$InitializationException: com.atlassian.util.concurrent.LazyReference$InitializationException: java.lang.NoSuchMethodError: com.atlassian.jira.issue.customfields.searchers.DateTimeRangeSearcher.(Lcom/atlassian/jira/security/JiraAuthenticationContext;Lcom/atlassian/jira/jql/operand/JqlOperandResolver;Lcom/atlassian/jira/util/velocity/VelocityRequestContextFactory;Lcom/atlassian/jira/config/properties/ApplicationProperties;Lcom/atlassian/velocity/VelocityManager;Lcom/atlassian/jira/web/action/util/CalendarLanguageUtil;Lcom/atlassian/jira/jql/util/JqlDateSupport;Lcom/atlassian/jira/issue/customfields/searchers/transformer/CustomFieldInputHelper;Lcom/atlassian/jira/timezone/TimeZoneManager;Lcom/atlassian/jira/datetime/DateTimeFormatterFactory;)V
java.lang.RuntimeException: java.util.concurrent.ExecutionException: com.atlassian.util.concurrent.LazyReference$InitializationException: com.atlassian.util.concurrent.LazyReference$InitializationException: com.atlassian.util.concurrent.LazyReference$InitializationException: java.lang.NoSuchMethodError: com.atlassian.jira.issue.customfields.searchers.DateTimeRangeSearcher.(Lcom/atlassian/jira/security/JiraAuthenticationContext;Lcom/atlassian/jira/jql/operand/JqlOperandResolver;Lcom/atlassian/jira/util/velocity/VelocityRequestContextFactory;Lcom/atlassian/jira/config/properties/ApplicationProperties;Lcom/atlassian/velocity/VelocityManager;Lcom/atlassian/jira/web/action/util/CalendarLanguageUtil;Lcom/atlassian/jira/jql/util/JqlDateSupport;Lcom/atlassian/jira/issue/customfields/searchers/transformer/CustomFieldInputHelper;Lcom/atlassian/jira/timezone/TimeZoneManager;Lcom/atlassian/jira/datetime/DateTimeFormatterFactory;)V
	at com.atlassian.jira.index.FutureResult.await(FutureResult.java:35)
	at com.atlassian.jira.index.CompositeResultBuilder$CompositeResult.await(CompositeResultBuilder.java:82)
	at com.atlassian.jira.issue.index.DefaultIndexManager.reIndexAll(DefaultIndexManager.java:286)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
	at java.lang.reflect.Method.invoke(Unknown Source)
	at com.atlassian.util.profiling.object.ObjectProfiler.profiledInvoke(ObjectProfiler.java:81)
	at com.atlassian.jira.config.component.SwitchingInvocationHandler.invoke(SwitchingInvocationHandler.java:28)
	at $Proxy121.reIndexAll(Unknown Source)
	at com.atlassian.jira.util.index.CompositeIndexLifecycleManager.reIndexAll(CompositeIndexLifecycleManager.java:49)
	at com.atlassian.jira.upgrade.UpgradeManagerImpl.reindex(UpgradeManagerImpl.java:923)
	at com.atlassian.jira.upgrade.UpgradeManagerImpl.runUpgradeTasks(UpgradeManagerImpl.java:543)
	at com.atlassian.jira.upgrade.UpgradeManagerImpl.doUpgrade(UpgradeManagerImpl.java:452)
	at com.atlassian.jira.upgrade.UpgradeManagerImpl.doUpgradeIfNeeded(UpgradeManagerImpl.java:391)
	at com.atlassian.jira.upgrade.UpgradeManagerImpl.doUpgradeIfNeededAndAllowed(UpgradeManagerImpl.java:325)
	at com.atlassian.jira.upgrade.UpgradeLauncher.checkIfUpgradeNeeded(UpgradeLauncher.java:100)
	at com.atlassian.jira.upgrade.UpgradeLauncher.start(UpgradeLauncher.java:49)
	at com.atlassian.jira.startup.DefaultJiraLauncher$3.run(DefaultJiraLauncher.java:103)
	at com.atlassian.jira.config.database.DatabaseConfigurationManagerImpl.doNowOrEnqueue(DatabaseConfigurationManagerImpl.java:284)
	at com.atlassian.jira.config.database.DatabaseConfigurationManagerImpl.doNowOrWhenDatabaseActivated(DatabaseConfigurationManagerImpl.java:169)
	at com.atlassian.jira.startup.DefaultJiraLauncher.postDbLaunch(DefaultJiraLauncher.java:94)
	at com.atlassian.jira.startup.DefaultJiraLauncher.access$100(DefaultJiraLauncher.java:24)
	at com.atlassian.jira.startup.DefaultJiraLauncher$1.run(DefaultJiraLauncher.java:61)
	at com.atlassian.jira.util.devspeed.JiraDevSpeedTimer.run(JiraDevSpeedTimer.java:33)
	at com.atlassian.jira.startup.DefaultJiraLauncher.start(DefaultJiraLauncher.java:56)
	at com.atlassian.jira.startup.LauncherContextListener$1.create(LauncherContextListener.java:67)
	at com.atlassian.jira.startup.LauncherContextListener$1.create(LauncherContextListener.java:62)
	at com.atlassian.multitenant.impl.MultiTenantComponentMapImpl.get(MultiTenantComponentMapImpl.java:121)
	at com.atlassian.multitenant.impl.MultiTenantComponentMapImpl.onTenantStart(MultiTenantComponentMapImpl.java:165)
	at com.atlassian.multitenant.impl.DefaultMultiTenantManager$1.consume(DefaultMultiTenantManager.java:134)
	at com.atlassian.multitenant.impl.DefaultMultiTenantManager$1.consume(DefaultMultiTenantManager.java:131)
	at com.atlassian.multitenant.impl.DefaultMultiTenantManager.runForEachListener(DefaultMultiTenantManager.java:256)
	at com.atlassian.multitenant.impl.DefaultMultiTenantManager.startTenant(DefaultMultiTenantManager.java:130)
	at com.atlassian.multitenant.impl.DefaultMultiTenantManager.startAll(DefaultMultiTenantManager.java:203)
	at com.atlassian.jira.startup.LauncherContextListener.contextInitialized(LauncherContextListener.java:95)
	at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4205)
	at org.apache.catalina.core.StandardContext.start(StandardContext.java:4704)
	at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1053)
	at org.apache.catalina.core.StandardHost.start(StandardHost.java:840)
	at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1053)
	at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:463)
	at org.apache.catalina.core.StandardService.start(StandardService.java:525)
	at org.apache.catalina.core.StandardServer.start(StandardServer.java:754)
	at org.apache.catalina.startup.Catalina.start(Catalina.java:595)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
	at java.lang.reflect.Method.invoke(Unknown Source)
	at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289)
	at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414)
Caused by: java.util.concurrent.ExecutionException: com.atlassian.util.concurrent.LazyReference$InitializationException: com.atlassian.util.concurrent.LazyReference$InitializationException: com.atlassian.util.concurrent.LazyReference$InitializationException: java.lang.NoSuchMethodError: com.atlassian.jira.issue.customfields.searchers.DateTimeRangeSearcher.(Lcom/atlassian/jira/security/JiraAuthenticationContext;Lcom/atlassian/jira/jql/operand/JqlOperandResolver;Lcom/atlassian/jira/util/velocity/VelocityRequestContextFactory;Lcom/atlassian/jira/config/properties/ApplicationProperties;Lcom/atlassian/velocity/VelocityManager;Lcom/atlassian/jira/web/action/util/CalendarLanguageUtil;Lcom/atlassian/jira/jql/util/JqlDateSupport;Lcom/atlassian/jira/issue/customfields/searchers/transformer/CustomFieldInputHelper;Lcom/atlassian/jira/timezone/TimeZoneManager;Lcom/atlassian/jira/datetime/DateTimeFormatterFactory;)V
	at java.util.concurrent.FutureTask$Sync.innerGet(Unknown Source)
	at java.util.concurrent.FutureTask.get(Unknown Source)
	at com.atlassian.jira.index.FutureResult.await(FutureResult.java:31)
	... 50 more
Caused by: com.atlassian.util.concurrent.LazyReference$InitializationException: com.atlassian.util.concurrent.LazyReference$InitializationException: com.atlassian.util.concurrent.LazyReference$InitializationException: java.lang.NoSuchMethodError: com.atlassian.jira.issue.customfields.searchers.DateTimeRangeSearcher.(Lcom/atlassian/jira/security/JiraAuthenticationContext;Lcom/atlassian/jira/jql/operand/JqlOperandResolver;Lcom/atlassian/jira/util/velocity/VelocityRequestContextFactory;Lcom/atlassian/jira/config/properties/ApplicationProperties;Lcom/atlassian/velocity/VelocityManager;Lcom/atlassian/jira/web/action/util/CalendarLanguageUtil;Lcom/atlassian/jira/jql/util/JqlDateSupport;Lcom/atlassian/jira/issue/customfields/searchers/transformer/CustomFieldInputHelper;Lcom/atlassian/jira/timezone/TimeZoneManager;Lcom/atlassian/jira/datetime/DateTimeFormatterFactory;)V
	at com.atlassian.util.concurrent.LazyReference.getInterruptibly(LazyReference.java:152)
	at com.atlassian.util.concurrent.LazyReference.get(LazyReference.java:115)
	at com.atlassian.util.concurrent.ResettableLazyReference.get(ResettableLazyReference.java:89)
	at com.atlassian.jira.issue.index.managers.FieldIndexerManagerImpl.getAllIssueIndexers(FieldIndexerManagerImpl.java:85)
	at com.atlassian.jira.issue.index.IssueDocument.getDocument(IssueDocument.java:37)
	at com.atlassian.jira.issue.index.DefaultIssueDocumentFactory.get(DefaultIssueDocumentFactory.java:15)
	at com.atlassian.jira.issue.index.DefaultIssueDocumentFactory.get(DefaultIssueDocumentFactory.java:11)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IssueLockDocumentCreationStrategy$2.get(DefaultIssueIndexer.java:519)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IssueLockDocumentCreationStrategy$2.get(DefaultIssueIndexer.java:516)
	at com.atlassian.util.concurrent.ManagedLocks$ManagedLockImpl.withLock(ManagedLocks.java:315)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IssueLockDocumentCreationStrategy.get(DefaultIssueIndexer.java:515)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IssueLockDocumentCreationStrategy.get(DefaultIssueIndexer.java:503)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IndexIssuesOperation.perform(DefaultIssueIndexer.java:374)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$4$1.get(DefaultIssueIndexer.java:258)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$4$1.get(DefaultIssueIndexer.java:254)
	at com.atlassian.jira.index.SimpleIndexingStrategy.get(SimpleIndexingStrategy.java:9)
	at com.atlassian.jira.index.SimpleIndexingStrategy.get(SimpleIndexingStrategy.java:5)
	at com.atlassian.jira.index.MultiThreadedIndexingStrategy$1.call(MultiThreadedIndexingStrategy.java:39)
	at com.atlassian.jira.index.MultiThreadedIndexingStrategy$1.call(MultiThreadedIndexingStrategy.java:36)
	at com.atlassian.jira.util.concurrent.BoundedExecutor$2.call(BoundedExecutor.java:70)
	at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
	at java.util.concurrent.FutureTask.run(Unknown Source)
	at com.atlassian.multitenant.impl.DefaultMultiTenantManager.runForTenant(DefaultMultiTenantManager.java:61)
	at com.atlassian.multitenant.juc.MultiTenantExecutors$WrappedRunnable.run(MultiTenantExecutors.java:160)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
	at java.lang.Thread.run(Unknown Source)
Caused by: com.atlassian.util.concurrent.LazyReference$InitializationException: com.atlassian.util.concurrent.LazyReference$InitializationException: java.lang.NoSuchMethodError: com.atlassian.jira.issue.customfields.searchers.DateTimeRangeSearcher.(Lcom/atlassian/jira/security/JiraAuthenticationContext;Lcom/atlassian/jira/jql/operand/JqlOperandResolver;Lcom/atlassian/jira/util/velocity/VelocityRequestContextFactory;Lcom/atlassian/jira/config/properties/ApplicationProperties;Lcom/atlassian/velocity/VelocityManager;Lcom/atlassian/jira/web/action/util/CalendarLanguageUtil;Lcom/atlassian/jira/jql/util/JqlDateSupport;Lcom/atlassian/jira/issue/customfields/searchers/transformer/CustomFieldInputHelper;Lcom/atlassian/jira/timezone/TimeZoneManager;Lcom/atlassian/jira/datetime/DateTimeFormatterFactory;)V
	at com.atlassian.util.concurrent.LazyReference.getInterruptibly(LazyReference.java:152)
	at com.atlassian.util.concurrent.LazyReference.get(LazyReference.java:115)
	at com.atlassian.util.concurrent.ResettableLazyReference.get(ResettableLazyReference.java:89)
	at com.atlassian.jira.issue.search.managers.DefaultSearchHandlerManager.getHelper(DefaultSearchHandlerManager.java:241)
	at com.atlassian.jira.issue.search.managers.DefaultSearchHandlerManager.getAllSearchers(DefaultSearchHandlerManager.java:223)
	at com.atlassian.jira.issue.search.managers.DefaultIssueSearcherManager.getAllSearchers(DefaultIssueSearcherManager.java:30)
	at com.atlassian.jira.issue.index.managers.FieldIndexerManagerImpl.init(FieldIndexerManagerImpl.java:91)
	at com.atlassian.jira.issue.index.managers.FieldIndexerManagerImpl.access$000(FieldIndexerManagerImpl.java:48)
	at com.atlassian.jira.issue.index.managers.FieldIndexerManagerImpl$1.create(FieldIndexerManagerImpl.java:57)
	at com.atlassian.jira.issue.index.managers.FieldIndexerManagerImpl$1.create(FieldIndexerManagerImpl.java:53)
	at com.atlassian.util.concurrent.ResettableLazyReference$InternalReference.create(ResettableLazyReference.java:143)
	at com.atlassian.util.concurrent.LazyReference$Sync.run(LazyReference.java:326)
	at com.atlassian.util.concurrent.LazyReference.getInterruptibly(LazyReference.java:146)
	... 26 more
Caused by: com.atlassian.util.concurrent.LazyReference$InitializationException: java.lang.NoSuchMethodError: com.atlassian.jira.issue.customfields.searchers.DateTimeRangeSearcher.(Lcom/atlassian/jira/security/JiraAuthenticationContext;Lcom/atlassian/jira/jql/operand/JqlOperandResolver;Lcom/atlassian/jira/util/velocity/VelocityRequestContextFactory;Lcom/atlassian/jira/config/properties/ApplicationProperties;Lcom/atlassian/velocity/VelocityManager;Lcom/atlassian/jira/web/action/util/CalendarLanguageUtil;Lcom/atlassian/jira/jql/util/JqlDateSupport;Lcom/atlassian/jira/issue/customfields/searchers/transformer/CustomFieldInputHelper;Lcom/atlassian/jira/timezone/TimeZoneManager;Lcom/atlassian/jira/datetime/DateTimeFormatterFactory;)V
	at com.atlassian.util.concurrent.LazyReference.getInterruptibly(LazyReference.java:152)
	at com.atlassian.util.concurrent.LazyReference.get(LazyReference.java:115)
	at com.atlassian.util.concurrent.ResettableLazyReference.get(ResettableLazyReference.java:89)
	at com.atlassian.jira.issue.fields.CustomFieldImpl.getCustomFieldSearcher(CustomFieldImpl.java:1682)
	at com.atlassian.jira.issue.fields.CustomFieldImpl.(CustomFieldImpl.java:227)
	at com.atlassian.jira.issue.fields.CustomFieldImpl.(CustomFieldImpl.java:204)
	at com.atlassian.jira.issue.managers.DefaultCustomFieldManager$CustomFieldCache.cloneCustomFields(DefaultCustomFieldManager.java:709)
	at com.atlassian.jira.issue.managers.DefaultCustomFieldManager$CustomFieldCache.getAllCustomFields(DefaultCustomFieldManager.java:696)
	at com.atlassian.jira.issue.managers.DefaultCustomFieldManager$CopyOnWriteCustomFieldCache.getAllCustomFields(DefaultCustomFieldManager.java:600)
	at com.atlassian.jira.issue.managers.DefaultCustomFieldManager.getAllCustomFields(DefaultCustomFieldManager.java:396)
	at com.atlassian.jira.issue.managers.DefaultCustomFieldManager.getCustomFieldObjects(DefaultCustomFieldManager.java:391)
	at com.atlassian.jira.issue.search.managers.DefaultSearchHandlerManager.createHelper(DefaultSearchHandlerManager.java:259)
	at com.atlassian.jira.issue.search.managers.DefaultSearchHandlerManager.access$000(DefaultSearchHandlerManager.java:67)
	at com.atlassian.jira.issue.search.managers.DefaultSearchHandlerManager$1.create(DefaultSearchHandlerManager.java:82)
	at com.atlassian.jira.issue.search.managers.DefaultSearchHandlerManager$1.create(DefaultSearchHandlerManager.java:78)
	at com.atlassian.util.concurrent.ResettableLazyReference$InternalReference.create(ResettableLazyReference.java:143)
	at com.atlassian.util.concurrent.LazyReference$Sync.run(LazyReference.java:326)
	at com.atlassian.util.concurrent.LazyReference.getInterruptibly(LazyReference.java:146)
	... 38 more
Caused by: java.lang.NoSuchMethodError: com.atlassian.jira.issue.customfields.searchers.DateTimeRangeSearcher.(Lcom/atlassian/jira/security/JiraAuthenticationContext;Lcom/atlassian/jira/jql/operand/JqlOperandResolver;Lcom/atlassian/jira/util/velocity/VelocityRequestContextFactory;Lcom/atlassian/jira/config/properties/ApplicationProperties;Lcom/atlassian/velocity/VelocityManager;Lcom/atlassian/jira/web/action/util/CalendarLanguageUtil;Lcom/atlassian/jira/jql/util/JqlDateSupport;Lcom/atlassian/jira/issue/customfields/searchers/transformer/CustomFieldInputHelper;Lcom/atlassian/jira/timezone/TimeZoneManager;Lcom/atlassian/jira/datetime/DateTimeFormatterFactory;)V
	at com.atlassian.jira.ext.charting.searchers.FirstResponseDateSearcher.(FirstResponseDateSearcher.java:24)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
	at java.lang.reflect.Constructor.newInstance(Unknown Source)
	at org.picocontainer.defaults.InstantiatingComponentAdapter.newInstance(InstantiatingComponentAdapter.java:100)
	at org.picocontainer.defaults.ConstructorInjectionComponentAdapter.instantiateComponent(ConstructorInjectionComponentAdapter.java:200)
	at org.picocontainer.defaults.InstantiatingComponentAdapter.getComponentInstance(InstantiatingComponentAdapter.java:48)
	at org.picocontainer.defaults.DecoratingComponentAdapter.getComponentInstance(DecoratingComponentAdapter.java:42)
	at org.picocontainer.defaults.SynchronizedComponentAdapter.getComponentInstance(SynchronizedComponentAdapter.java:35)
	at org.picocontainer.defaults.DecoratingComponentAdapter.getComponentInstance(DecoratingComponentAdapter.java:42)
	at com.atlassian.jira.config.component.ProfilingComponentAdapter.getComponentInstance(ProfilingComponentAdapter.java:45)
	at org.picocontainer.defaults.DefaultPicoContainer.getComponentInstance(DefaultPicoContainer.java:298)
	at com.atlassian.jira.util.JiraUtils.loadComponent(JiraUtils.java:113)
	at com.atlassian.jira.util.JiraUtils.loadComponent(JiraUtils.java:91)
	at com.atlassian.jira.issue.managers.DefaultCustomFieldManager.getCustomFieldSearcher(DefaultCustomFieldManager.java:257)
	at com.atlassian.jira.issue.fields.CustomFieldImpl$CustomFieldSearcherLazyRef.create(CustomFieldImpl.java:1976)
	at com.atlassian.jira.issue.fields.CustomFieldImpl$CustomFieldSearcherLazyRef.create(CustomFieldImpl.java:1956)
	at com.atlassian.util.concurrent.ResettableLazyReference$InternalReference.create(ResettableLazyReference.java:143)
	at com.atlassian.util.concurrent.LazyReference$Sync.run(LazyReference.java:326)
	at com.atlassian.util.concurrent.LazyReference.getInterruptibly(LazyReference.java:146)
	... 55 more

If I shutdown and start JIRA again, this page is gone, the application works, but there are no Jira issues. They are gone.

I have tried to attach .install4j/installation.log, but the upload functionality seems to be broken and the file is not uploaded even if I rename it to .txt

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Answer accepted
Jobin Kuruvilla [Adaptavist]
Jobin Kuruvilla [Adaptavist]
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July 12, 2012

Seems to be coming from JIRA Charting plugin? Remove the plugin before you upgrade and install the new version after you upgrade. See if that fixes the issue.

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Yuri Leikind
Yuri Leikind July 12, 2012

Oh, right.

It worked.

Thank you!

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B_ Normann P_ Nielsen
B_ Normann P_ Nielsen
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November 13, 2012

Thanx, helped me 2, going from 5.0 to 5.2

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