Jira not starting with appdynamics agent

[satya pandey]

I am using Jira version: "atlassian-jira-software-7.5.0-x64.bin" and trying to monitor it with App dynamics agent.

For which I changed JIRA tomcat server Catalina.sh to start the java-agent on Linux machine as by adding below loop

if [ -z "$LOGGING_MANAGER" ]; then

LOGGING_MANAGER="-Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager"else JAVA_OPTS="$JAVA_OPTS $LOGGING_MANAGER"

fi

if [ "$1" = "start" -o "$1" = "run" ]; thenexport JAVA_OPTS="$JAVA_OPTS -javaagent:/opt/appdynamics/appagent/javaagent.jar"

fi

Also

Tried changing this in setenv.sh to map javaagent with CATALINA_OPTS = javaagent:/opt/appdynamics/appagent/javaagent.jar"

With the above changes I am able to register the Agents in Appdynamics SAAS version. But Jira is not starting up.

In both cases I am getting same issue

DASHBOARD ERROR==================================

JIRA access problem

System plugins failed to start: We haven't been able to start all the required system plugins

We couldn't start the following plugins:

• JIRA Projects Plugin (com.atlassian.jira.jira-projects-plugin)
• Atlassian OAuth Consumer Plugin (com.atlassian.oauth.consumer)
• Atlassian Navigation Links Plugin (com.atlassian.plugins.atlassian-nav-links-plugin)
• Atlassian JIRA - Plugins - OAuth Service Provider SPI (com.atlassian.jira.oauth.serviceprovider)
• Atlassian JIRA - Plugins - Project Config Plugin (com.atlassian.jira.jira-project-config-plugin)
• Applinks - Plugin - Core (com.atlassian.applinks.applinks-plugin)
• Atlassian OAuth Service Provider Plugin (com.atlassian.oauth.serviceprovider)
• Embedded Gadgets Plugin (com.atlassian.gadgets.embedded)
• Gadget Directory Plugin (com.atlassian.gadgets.directory)
• Atlassian Plugins - JavaScript libraries (com.atlassian.plugin.jslibs)
• Atlassian JIRA - Plugins - Gadgets Plugin (com.atlassian.jira.gadgets)
• Atlassian JIRA - Plugins - Global Issue Navigator (com.atlassian.jira.jira-issue-nav-plugin)
• Atlassian JIRA - Plugins - File viewer plugin (com.atlassian.jira.jira-fileviewer-plugin)
• Atlassian Pretty URLs Plugin (com.atlassian.prettyurls.atlassian-pretty-urls-plugin)
• Atlassian JIRA - Plugins - Quick Edit Plugin (com.atlassian.jira.jira-quick-edit-plugin)
• Atlassian OAuth Admin Plugin (com.atlassian.oauth.admin)
• Atlassian REST - Module Types (com.atlassian.plugins.rest.atlassian-rest-module)
• Atlassian JIRA - Plugins - REST Plugin (com.atlassian.jira.rest)
• Opensocial Plugin (com.atlassian.gadgets.opensocial)
• atlassian-servlet-plugin (com.atlassian.web.atlassian-servlet-plugin)
• Atlassian JIRA - Plugins - Look And Feel Logo Upload Plugin (com.atlassian.jira.lookandfeel)
• Gadget Spec Publisher Plugin (com.atlassian.gadgets.publisher)
• Atlassian JIRA - Plugins - OAuth Consumer SPI (com.atlassian.jira.oauth.consumer)
• Atlassian JIRA - Plugins - SAL Plugin (com.atlassian.sal.jira)
• Gadget Dashboard Plugin (com.atlassian.gadgets.dashboard)

 ===========================

JIRA LOGS===============================

ERROR: Bundle org.eclipse.gemini.blueprint.extender [8] Error starting file:/opt/atlassian/infyjira/atlassian-jira/WEB-INF/osgi-framework-bundles/gemini-blueprint-extender-2.0.5.BUILD-atlassian-m002.jar (org.osgi.framework.BundleException: Activator start error in bundle org.eclipse.gemini.blueprint.extender [8].)2018-01-04 11:09:02,212 FelixDispatchQueue ERROR [c.a.p.o.container.felix.FelixOsgiContainerManager] Framework error in bundle org.eclipse.gemini.blueprint.extender2018-01-04 11:14:10,442 JIRA-Bootstrap ERROR [c.a.plugin.manager.PluginEnabler] Unable to start the following plugins due to timeout while waiting for plugin to enable: com.atlassian.jira.jira-projects-plugin,com.atlassian.jira.jira-issue-link-web-plugin,tac.jira software.languages.sk_SK,com.atlassian.jira.oauth.serviceprovider,com.atlassian.streams.jira.inlineactions,com.atlassian.jira.jira-fileviewer-plugin,com.atlassian.scala.plugins.scala-2.10-provider-plugin,crowd-rest-application-management,com.atlassian.gadgets.directory,tac.jira core.languages.sk_SK,tac.jira software.languages.fr_FR,com.atlassian.upm.role-based-licensing-plugin,com.atlassian.whisper.atlassian-whisper-plugin,com.atlassian.auiplugin,com.atlassian.gadgets.embedded,com.atlassian.templaterenderer.api,com.atlassian.jira.collector.plugin.jira-issue-collector-plugin,com.atlassian.plugins.atlassian-nav-links-plugin,com.atlassian.upm.atlassian-universal-plugin-manager-plugin,com.atlassian.jira.jira-user-profile-plugin,com.atlassian.jira.plugins.jira-wiki-editor,com.atlassian.jira.jira-issue-link-applinks-common-plugin,tac.jira core.languages.da_DK,tac.jira core.languages.no_NO,tac.jira software.languages.ko_KR,com.atlassian.upm.upm-application-plugin,com.atlassian.jira.jira-onboarding-assets-plugin,com.atlassian.plugins.browser.metrics.browser-metrics-plugin,com.atlassian.analytics.analytics-client,com.atlassian.oauth.atlassian-oauth-consumer-spi,com.atlassian.jira.jira-languages.en_US,com.atlassian.jira.jira-my-home-plugin,tac.jira software.languages.de_DE,com.atlassian.jira.plugins.jira-importers-github-plugin,com.atlassian.jira.plugins.jira-importers-plugin,com.atlassian.applinks.applinks-trustedapps-plugin,com.atlassian.jira.plugins.webhooks.jira-webhooks-plugin,com.atlassian.sal.jira,com.atlassian.jira.plugins.jira-password-policy-plugin,com.atlassian.streams.actions,tac.jira software.languages.en_US,com.atlassian.plugins.atlassian-whitelist-api-plugin,com.atlassian.plugins.atlassian-plugins-webresource-rest,tac.jira core.languages.is_I...

2018-01-04 11:14:10,704 JIRA-Bootstrap ERROR [c.a.jira.startup.SystemPluginsEnabledHealthCheck] We couldn't start the following plugins:2018-01-04 11:14:10,715 JIRA-Bootstrap ERROR [c.a.jira.health.HealthChecks] We haven't been able to start all the required system plugins2018-01-04 11:14:10,715 JIRA-Bootstrap ERROR [c.a.jira.health.HealthChecks] We couldn't start the following plugins:2018-01-04 11:14:11,598 JIRA-Bootstrap ERROR [c.a.jira.startup.DefaultJiraLauncher] JIRA has failed to start because of the following errors: [(Event: Level = (EventLevel: fatal) , Key = (EventType: system-plugins) , Desc = We haven't been able to start all the required system plugins , Exception = We couldn't start the following plugins:<br/><ul><li>JIRA Projects Plugin (com.atlassian.jira.jira-projects-plugin)</li><li>Atlassian OAuth Consumer Plugin (com.atlassian.oauth.consumer)...

====================

Any Quick Replies or recommendations for this issue ???

[satya pandey]

Got the solution

added below lines in start-jira.sh

export START_JIRA_JAVA_OPTS="-Datlassian.plugins.startup.options='${@}' -Datlassian.plugins.enable.wait=600 -Datlassian.org.osgi.framework.bootdelegation=META-INF.services,com.yourkit,com.singularity.*,com.jprofiler,com.jprofiler.*,org.apache.xerces,org.apache.xerces.*,org.apache.xalan,org.apache.xalan.*,sun.*,com.sun.jndi,com.icl.saxon,com.icl.saxon.*,javax.servlet,javax.servlet.*,com.sun.xml.bind.*"

[Noel John]

How to add this using sed command? i tried below but didnt work.

echo "sed -i '15s/export START_JIRA_JAVA_OPTS=\"-Datlassian.plugins.startup.options='${@}'\"/export START_JIRA_JAVA_OPTS==\"-Datlassian.plugins.startup.options='${@}' -Datlassian.plugins.enable.wait=600 -Datlassian.org.osgi.framework.bootdelegation=META-INF.services,com.yourkit,com.singularity.*,com.jprofiler,com.jprofiler.*,org.apache.xerces,org.apache.xerces.*,org.apache.xalan,org.apache.xalan.*,sun.*,com.sun.jndi,com.icl.saxon,com.icl.saxon.*,javax.servlet,javax.servlet.*,com.sun.xml.bind.*\"/g' ./bin/start-jira.sh" >> run.sh;