May be you should not accept my answer as this has not resolved your issue.
Check the atlassian-jira.log, search for 'modified files' and find if you have customized any files. Haven't seen such a file before.
And most important, what does the file contain? Can you post a portion of the file?
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As part of the Bitbucket product team I'm always interested in better understanding what kind of impact the use of our tools have on the way you work. In a recent study we conducted of software devel...
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