JIRA stand-alone initial start does not complete, but no errors are logged

hi,

my jira instance does not start although log reports nothing wrong. If I understand it right, I got to the point of the core system and default plugins being enabled, but the system is not running = port is not reachable. I can't think of anything else I could investigate. The log file is attached. (catalina.out.txt) (catalina.out.txt)

Previously I had issues with outofmemoryerror, but that was resolved by incresing memory by export JAVA_OPTS="-Xms256m -Xmx512m".

I'm installing JIRA onto amazon EC2. First I installed java + tomcat, then jira,

Oct 11, 2012 6:40:05 PM org.apache.catalina.core.AprLifecycleListener init

INFO: The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: /opt/atlassian/jira/jre/lib/amd64/server:/opt/atlassian/jira/jre/lib/amd64:/opt/atlassian/jira/jre/../lib/amd64:/usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib

Oct 11, 2012 6:40:05 PM org.apache.coyote.http11.Http11Protocol init

INFO: Initializing Coyote HTTP/1.1 on http-8081

Oct 11, 2012 6:40:05 PM org.apache.catalina.startup.Catalina load

INFO: Initialization processed in 2069 ms

Oct 11, 2012 6:40:05 PM org.apache.catalina.realm.JAASRealm setContainer

INFO: Set JAAS app name Catalina

Oct 11, 2012 6:40:05 PM org.apache.catalina.core.StandardService start

INFO: Starting service Catalina

Oct 11, 2012 6:40:05 PM org.apache.catalina.core.StandardEngine start

INFO: Starting Servlet Engine: Apache Tomcat/6.0.32

2012-10-11 18:40:13,433 main INFO      [jira.config.database.SystemTenantDatabaseConfigurationLoader] Reading database configuration from /var/atlassian/application-data/jira/dbconfig.xml

2012-10-11 18:40:14,181 main INFO      [atlassian.jira.startup.JiraStartupLogger] 

 

****************

JIRA starting...

****************

 

2012-10-11 18:40:14,312 main INFO      [atlassian.jira.startup.JiraStartupLogger] 

 

___ Environment _____________________________

 

     JIRA Build                                    : 5.1.6#785-sha1:8d9ee55efd0253d225a09d2c55f2f71a303affe4

     Build Date                                    : Tue Sep 25 00:00:00 UTC 2012

     JIRA Installation Type                        : Standalone

     Application Server                            : Apache Tomcat/6.0.32 - Servlet API 2.5

     Java Version                                  : 1.6.0_26 - Sun Microsystems Inc.

     Current Working Directory                     : /opt/atlassian/jira/bin

     Maximum Allowable Memory                      : 742MB

     Total Memory                                  : 494MB

     Free Memory                                   : 432MB

     Used Memory                                   : 62MB

     Memory Pool: Code Cache                       : Code Cache: init = 2555904(2496K) used = 1011136(987K) committed = 2555904(2496K) max = 50331648(49152K)

     Memory Pool: Eden Space                       : Eden Space: init = 143130624(139776K) used = 65919488(64374K) committed = 143130624(139776K) max = 214827008(209792K)

     Memory Pool: Survivor Space                   : Survivor Space: init = 17891328(17472K) used = 0(0K) committed = 17891328(17472K) max = 26804224(26176K)

     Memory Pool: Tenured Gen                      : Tenured Gen: init = 357957632(349568K) used = 0(0K) committed = 357957632(349568K) max = 536870912(524288K)

     Memory Pool: Perm Gen                         : Perm Gen: init = 21757952(21248K) used = 16407736(16023K) committed = 21757952(21248K) max = 268435456(262144K)

     JVM Input Arguments                           : -Djava.util.logging.config.file=/opt/atlassian/jira/conf/logging.properties -XX:MaxPermSize=256m -Xms512m -Xmx768m -Djava.awt.headless=true -Datlassian.standalone=JIRA -Dorg.apache.jasper.runtime.BodyContentImpl.LIMIT_BUFFER=true -Dmail.mime.decodeparameters=true -XX:+PrintGCDateStamps -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager -Djava.endorsed.dirs=/opt/atlassian/jira/endorsed -Dcatalina.base=/opt/atlassian/jira -Dcatalina.home=/opt/atlassian/jira -Djava.io.tmpdir=/opt/atlassian/jira/temp

 

___ Java System Properties _________________

 

     atlassian.standalone                          : JIRA

     catalina.base                                 : /opt/atlassian/jira

     catalina.home                                 : /opt/atlassian/jira

     catalina.useNaming                            : true

     common.loader                                 : ${catalina.base}/lib,

                                                     ${catalina.base}/lib/*.jar,

                                                     ${catalina.home}/lib,

                                                     ${catalina.home}/lib/*.jar

     file.encoding                                 : ANSI_X3.4-1968

     file.encoding.pkg                             : sun.io

     java.awt.graphicsenv                          : sun.awt.X11GraphicsEnvironment

     java.awt.headless                             : true

     java.awt.printerjob                           : sun.print.PSPrinterJob

     java.class.version                            : 50.0

     java.home                                     : /opt/atlassian/jira/jre

     java.io.tmpdir                                : /opt/atlassian/jira/temp

     java.naming.factory.initial                   : org.apache.naming.java.javaURLContextFactory

     java.naming.factory.url.pkgs                  : org.apache.naming

     java.runtime.name                             : Java(TM) SE Runtime Environment

     java.runtime.version                          : 1.6.0_26-b03

     java.specification.name                       : Java Platform API Specification

     java.specification.vendor                     : Sun Microsystems Inc.

     java.specification.version                    : 1.6

     java.util.logging.config.file                 : /opt/atlassian/jira/conf/logging.properties

     java.util.logging.manager                     : org.apache.juli.ClassLoaderLogManager

     java.vendor                                   : Sun Microsystems Inc.

     java.vendor.url                               : http://java.sun.com/

     java.vendor.url.bug                           : http://java.sun.com/cgi-bin/bugreport.cgi

     java.version                                  : 1.6.0_26

     java.vm.info                                  : mixed mode

     java.vm.name                                  : Java HotSpot(TM) 64-Bit Server VM

     java.vm.specification.name                    : Java Virtual Machine Specification

     java.vm.specification.vendor                  : Sun Microsystems Inc.

     java.vm.specification.version                 : 1.0

     java.vm.vendor                                : Sun Microsystems Inc.

     java.vm.version                               : 20.1-b02

     mail.mime.decodeparameters                    : true

     org.apache.jasper.runtime.BodyContentImpl.LIMIT_BUFFER : true

     os.arch                                       : amd64

     os.name                                       : Linux

     os.version                                    : 3.2.29-48.63.amzn1.x86_64

     package.access                                : sun.,

                                                     org.apache.catalina.,

                                                     org.apache.coyote.,

                                                     org.apache.tomcat.,

                                                     org.apache.jasper.,

                                                     sun.beans.

     package.definition                            : sun.,

                                                     java.,

                                                     org.apache.catalina.,

                                                     org.apache.coyote.,

                                                     org.apache.tomcat.,

                                                     org.apache.jasper.

     server.loader                                 : 

     shared.loader                                 : 

     sun.arch.data.model                           : 64

     sun.boot.library.path                         : /opt/atlassian/jira/jre/lib/amd64

     sun.cpu.endian                                : little

     sun.cpu.isalist                               : 

     sun.io.unicode.encoding                       : UnicodeLittle

     sun.java.command                              : org.apache.catalina.startup.Bootstrap start

     sun.java.launcher                             : SUN_STANDARD

     sun.jnu.encoding                              : ANSI_X3.4-1968

     sun.management.compiler                       : HotSpot 64-Bit Tiered Compilers

     sun.os.patch.level                            : unknown

     tomcat.util.buf.StringCache.byte.enabled      : true

     user.country                                  : US

     user.dir                                      : /opt/atlassian/jira/bin

     user.home                                     : /home/jira

     user.language                                 : en

     user.name                                     : jira

     user.timezone                                 : UTC

 

2012-10-11 18:40:14,322 main INFO      [atlassian.jira.startup.JiraStartupLogger] Running JIRA startup checks.

2012-10-11 18:40:14,678 main INFO      [atlassian.jira.startup.JiraHomeStartupCheck] The jira.home directory '/var/atlassian/application-data/jira' is validated and locked for exclusive use by this instance.

2012-10-11 18:40:14,680 main INFO      [atlassian.jira.startup.JiraStartupLogger] JIRA pre-database startup checks completed successfully.

2012-10-11 18:40:15,631 main INFO      [jira.config.database.SystemTenantDatabaseConfigurationLoader] Reading database configuration from /var/atlassian/application-data/jira/dbconfig.xml

2012-10-11 18:40:15,823 main INFO      [jira.config.database.DatabaseConfigurationManagerImpl] Now running Database Checklist Launcher

2012-10-11 18:40:19,837 main INFO      [atlassian.jira.startup.DatabaseChecklistLauncher] JIRA database startup checks completed successfully.

2012-10-11 18:40:19,848 main INFO      [jira.config.database.DatabaseConfigurationManagerImpl] Now running Post database-configuration launchers

2012-10-11 18:40:34,771 main INFO      [jira.config.database.SystemTenantDatabaseConfigurationLoader] Reading database configuration from /var/atlassian/application-data/jira/dbconfig.xml

2012-10-11 18:40:47,718 main INFO      [atlassian.jira.startup.DatabaseLauncher] Database transactions enabled: true

2012-10-11 18:40:48,293 main INFO      [atlassian.jira.startup.DatabaseLauncher] Using JIRA's default for database transaction isolation level: 2

2012-10-11 18:40:48,295 main INFO      [atlassian.jira.startup.JiraStartupLogger] 

 

Database configuration OK

 

___ Database Configuration _________________

 

     Loading entityengine.xml from                 : file:/opt/atlassian/jira/atlassian-jira/WEB-INF/classes/entityengine.xml

     Entity model field type name                  : mysql

     Entity model schema name                      : 

     Database Version                              : MySQL - 5.5.24

     Database Driver                               : MySQL-AB JDBC Driver - mysql-connector-java-5.1.10 ( Revision: ${svn.Revision} )

     Database URL                                  : jdbc:mysql://localhost:3306/jira?useUnicode=true&characterEncoding=UTF8&sessionVariables=storage_engine=InnoDB

     Database JDBC config                          : mysql jdbc:mysql://localhost:3306/jira?useUnicode=true&characterEncoding=UTF8&sessionVariables=storage_engine=InnoDB

 

2012-10-11 18:41:05,068 main INFO      [atlassian.jira.startup.JiraStartupLogger] 

 

___ Starting the JIRA Plugin System _________________

 

2012-10-11 18:41:05,167 main INFO      [atlassian.plugin.manager.DefaultPluginManager] Initialising the plugin system

2012-10-11 18:42:55,393 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/activeobjects-jira-spi-0.19.7.jar (1348566594000) created

2012-10-11 18:42:56,032 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/activeobjects-plugin-0.19.7.jar (1348566592000) created

2012-10-11 18:42:56,143 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/applinks-plugin-3.7.3.jar (1348566574000) created

2012-10-11 18:42:56,189 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/atlassian-admin-quicksearch-jira-1.0.jar (1348566592000) created

2012-10-11 18:42:56,196 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/atlassian-bot-killer-1.7.1.jar (1348566592000) created

2012-10-11 18:42:56,242 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/atlassian-gadgets-dashboard-plugin-3.2.0-m2.jar (1348566594000) created

2012-10-11 18:42:56,291 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/atlassian-gadgets-directory-plugin-3.2.0-m2.jar (1348566594000) created

2012-10-11 18:42:56,310 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/atlassian-gadgets-embedded-plugin-3.2.0-m2.jar (1348566594000) created

2012-10-11 18:42:56,323 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/atlassian-gadgets-oauth-service-provider-plugin-3.2.0-m2.jar (1348566594000) created

2012-10-11 18:42:56,440 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/atlassian-gadgets-opensocial-plugin-3.2.0-m2.jar (1348566594000) created

2012-10-11 18:42:56,532 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/atlassian-gadgets-publisher-plugin-3.2.0-m2.jar (1348566594000) created

2012-10-11 18:42:56,675 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/atlassian-jira-rpc-plugin-5.1.1.jar (1348566594000) created

2012-10-11 18:42:56,740 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/atlassian-oauth-admin-plugin-1.4.1.jar (1348566594000) created

2012-10-11 18:42:56,755 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/atlassian-oauth-consumer-plugin-1.4.1.jar (1348566594000) created

2012-10-11 18:42:56,822 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/atlassian-oauth-consumer-spi-1.4.1.jar (1348566456000) created

2012-10-11 18:42:56,888 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/atlassian-oauth-service-provider-plugin-1.4.1.jar (1348566594000) created

2012-10-11 18:42:56,912 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/atlassian-oauth-service-provider-spi-1.4.1.jar (1348566452000) created

2012-10-11 18:42:57,022 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/atlassian-rest-module-compat25-5.1.6.jar (1348567056000) created

2012-10-11 18:42:57,039 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/atlassian-template-renderer-api-1.4.2.jar (1348566442000) created

2012-10-11 18:42:57,112 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/atlassian-template-renderer-velocity16-plugin-1.4.2.jar (1348566442000) created

2012-10-11 18:42:57,268 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/atlassian-universal-plugin-manager-plugin-2.1.5.jar (1348566592000) created

2012-10-11 18:42:57,435 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/auiplugin-3.7-m6.jar (1348566592000) created

2012-10-11 18:42:57,470 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/com.springsource.com.sun.syndication-0.9.0.jar (1348566592000) created

2012-10-11 18:42:57,501 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/com.springsource.org.jdom-1.0.0.jar (1348566592000) created

2012-10-11 18:42:57,532 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/crowd-rest-application-management-2.4.3.jar (1348566490000) created

2012-10-11 18:42:57,573 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/crowd-rest-plugin-2.4.3.jar (1348566490000) created

2012-10-11 18:42:57,643 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/embedded-crowd-admin-plugin-1.4.3.jar (1348566594000) created

2012-10-11 18:42:57,693 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/hipchat-plugin-1.1.7.jar (1348566592000) created

2012-10-11 18:42:57,753 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/httpclient-osgi-4.0.jar (1348566594000) created

2012-10-11 18:42:57,785 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/httpcore-osgi-4.0.jar (1348566594000) created

2012-10-11 18:42:57,980 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/icu4j-3.8-1.jar (1348566594000) created

2012-10-11 18:42:58,219 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-admin-summary-plugin-5.1.6.jar (1348567078000) created

2012-10-11 18:42:58,247 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-application-properties-plugin-5.1.6.jar (1348567076000) created

2012-10-11 18:42:58,405 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-bamboo-plugin-5.1.jar (1348566594000) created

2012-10-11 18:42:59,353 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-fisheye-plugin-5.0.7.jar (1348566594000) created

2012-10-11 18:42:59,392 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-gadgets-plugin-5.1.6.jar (1348567072000) created

2012-10-11 18:42:59,415 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-header-plugin-5.1.6.jar (1348567080000) created

2012-10-11 18:42:59,447 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-help-tips-0.22.jar (1348566592000) created

2012-10-11 18:42:59,479 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-ical-feed-1.0.9.jar (1348566592000) created

2012-10-11 18:42:59,659 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-importers-plugin-4.4.jar (1348566594000) created

2012-10-11 18:42:59,690 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-invite-user-plugin-1.5.jar (1348566594000) created

2012-10-11 18:42:59,745 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-issue-collector-plugin-1.1.2.jar (1348566592000) created

2012-10-11 18:42:59,753 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-issue-link-applinks-common-plugin-5.1.6.jar (1348567108000) created

2012-10-11 18:42:59,775 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-issue-link-confluence-plugin-5.1.6.jar (1348567112000) created

2012-10-11 18:42:59,812 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-issue-link-remote-jira-plugin-5.1.6.jar (1348567110000) created

2012-10-11 18:42:59,824 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-issue-link-web-plugin-5.1.6.jar (1348567110000) created

2012-10-11 18:42:59,906 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-issue-nav-plugin-1.0.55.jar (1348566594000) created

2012-10-11 18:42:59,939 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-json-rpc-plugin-1.0.4.jar (1348566592000) created

2012-10-11 18:43:00,045 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-language-pack-de_DE-5.1.5-v2r5347-2012-09-20.jar (1348566594000) created

2012-10-11 18:43:00,071 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-language-pack-es_ES-5.1.5-v2r11542-2012-09-17.jar (1348566594000) created

2012-10-11 18:43:00,094 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-language-pack-fr_FR-5.1.5-v2r2043-2012-09-17.jar (1348566592000) created

2012-10-11 18:43:00,109 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-language-pack-ja_JP-5.1.5-v2r13346-2012-09-20.jar (1348566592000) created

2012-10-11 18:43:00,128 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-languages-5.1.6-en_UK.jar (1348566866000) created

2012-10-11 18:43:00,143 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-languages-5.1.6-en_US.jar (1348566866000) created

2012-10-11 18:43:00,163 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-lookandfeel-plugin-5.1.6.jar (1348567080000) created

2012-10-11 18:43:00,199 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-mail-plugin-5.1.6.jar (1348567106000) created

2012-10-11 18:43:00,258 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-monitoring-plugin-05.5.jar (1348566594000) created

2012-10-11 18:43:00,273 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-my-home-plugin-5.1.6.jar (1348567106000) created

2012-10-11 18:43:00,281 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-oauth-consumer-spi-plugin-5.1.6.jar (1348567062000) created

2012-10-11 18:43:00,286 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-oauth-service-provider-spi-plugin-5.1.6.jar (1348567060000) created

2012-10-11 18:43:00,477 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-project-config-plugin-5.1.6.jar (1348567076000) created

2012-10-11 18:43:00,528 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-quick-edit-plugin-1.0.52.jar (1348566594000) created

2012-10-11 18:43:00,541 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-rest-plugin-5.1.6.jar (1348567068000) created

2012-10-11 18:43:00,555 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-sal-plugin-5.1.6.jar (1348567074000) created

2012-10-11 18:43:00,570 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-share-plugin-5.1.6.jar (1348567108000) created

2012-10-11 18:43:00,577 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-soy-plugin-5.1.6.jar (1348567078000) created

2012-10-11 18:43:00,593 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-tzdetect-plugin-1.5.jar (1348566594000) created

2012-10-11 18:43:00,638 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-view-issue-plugin-5.1.6.jar (1348567080000) created

2012-10-11 18:43:00,654 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/jira-welcome-plugin-1.1.10.jar (1348566592000) created

2012-10-11 18:43:00,666 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/json-20070829-1.jar (1348566592000) created

2012-10-11 18:43:00,693 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/nekohtml-1.9.12-1.jar (1348566594000) created

2012-10-11 18:43:00,754 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/remoteapps-plugin-0.4.518.jar (1348566594000) created

2012-10-11 18:43:00,800 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/rome-1.0.jar (1348566592000) created

2012-10-11 18:43:00,840 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/soy-template-plugin-1.1.3.jar (1348566482000) created

2012-10-11 18:43:00,902 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/stp-3.0.9.jar (1348566592000) created

2012-10-11 18:43:01,149 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/streams-aggregator-plugin-5.1.6.jar (1348566594000) created

2012-10-11 18:43:01,164 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/streams-api-5.1.6.jar (1348566594000) created

2012-10-11 18:43:01,192 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/streams-core-plugin-5.1.6.jar (1348566594000) created

2012-10-11 18:43:01,205 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/streams-inline-actions-plugin-5.1.6.jar (1348566594000) created

2012-10-11 18:43:01,211 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/streams-jira-inline-actions-plugin-5.1.6.jar (1348566594000) created

2012-10-11 18:43:01,502 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/streams-jira-plugin-5.1.6.jar (1348566592000) created

2012-10-11 18:43:01,554 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/streams-spi-5.1.6.jar (1348566594000) created

2012-10-11 18:43:01,588 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/streams-thirdparty-plugin-5.1.6.jar (1348566594000) created

2012-10-11 18:43:01,630 main INFO      [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/workflow-designer-plugin-2.6.13.jar (1348566592000) created

2 answers

Maximum Allowable Memory : 742MB

According to your logs, but you said you have max memory set to 512MB. Can you confirm this?

Also, which EC2 instance are you on? I noticed you were running with 64bit Java - try 32bit - it might save a bit of memory in this situation and help.

Harry,

1) do you think, I still have a memory issue? I see, copied a wrong line before. I changed the default minimum memory from 256 to 512 in /opt/atlassian/jira/bin/setenv.sh

JVM_MINIMUM_MEMORY="512m"

JVM_MAXIMUM_MEMORY="768m"

2) I used Amazon Linux AMI template to create this instance.
3) Shall I try using WAR file instead?

Are you on a Micro or Small instance of EC2?

The micro instance only has 640mb altogether. Assuming you have a local database and other processes running, I would as I said make the JRE 32bit and also set JVM_MAXIMUM_MEMORY="512m"

Tried changing JVM_MAXIMUM_MEMOR to 512, but got the same result. The startup process always finishes with:

2012-10-11 18:43:01,630 main INFO [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: /var/atlassian/application-data/jira/plugins/.bundled-plugins/workflow-designer-plugin-2.6.13.jar (1348566592000) created

When I run # free -m upon completion, I get this

Cpu(s): 0.0%us, 0.4%sy, 0.0%ni, 99.6%id, 0.0%wa, 0.0%hi, 0.0%si, 0.0%st

Mem: 608740k total, 280568k used, 328172k free, 5396k buffers

Swap: 0k total, 0k used, 0k free, 114724k cached

Shall I then reinstall both JVM and Jira to 32 versions? Any JVM version in particular?

thanks

I installed the 32bit version yet again tried different min/max memory settings and still I get similar kind of issue. But now I at least get some info through the browser: Required plugins didn't load due to lack of memory.

As I run apache/php within the same instance, I might need to get rid of those.

Yes, you simply don't have enough memory in a micro instance to do everything. It's very limited. That is why we never run any client hosted solutions on an Amazon EC2 Micro.

David,

With such a machine I am afraid that you will never be able to have a peaceful installation of JIRA. Even if it starts, you will always land in trouble due to resource crunch.

And one more point, in Linux, the best is to use the installer, rather than manually setting it up and also the installer includes the JRE and there is not need to seperately take care of JRE/JDK.

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