JIRA Startup Failed / JiraLockedError

[code-in]

I'm new on Atlassian. I followed instrunctions for setting up Atlassian.After installatians my configuration is this  (from jira_home/log/atlassian-jira.log): 

Application Server                            : Apache Tomcat/8.0.36 - Servlet API 3.1
Java Version                                  : 1.8.0_25 - Oracle Corporation
Current Working Directory                     : C:\Users\Ahmet\Developing Env\AtlassianProjects\JiraApp\target\container\tomcat8x\cargo-jira-home
Maximum Allowable Memory                      : 455MB
Total Memory                                  : 146MB
Free Memory                                   : 101MB
Used Memory                                   : 45MB
Memory Pool: Code Cache                       : Code Cache: init = 2555904(2496K) used = 9799040(9569K) committed = 9961472(9728K) max = 251658240(245760K)
Memory Pool: Metaspace                        : Metaspace: init = 0(0K) used = 21888232(21375K) committed = 22675456(22144K) max = -1(-1K)
Memory Pool: Compressed Class Space           : Compressed Class Space: init = 0(0K) used = 2524280(2465K) committed = 2752512(2688K) max = 1073741824(1048576K)
Memory Pool: PS Eden Space                    : PS Eden Space: init = 34078720(33280K) used = 20981768(20490K) committed = 59244544(57856K) max = 169345024(165376K)
Memory Pool: PS Survivor Space                : PS Survivor Space: init = 5242880(5120K) used = 0(0K) committed = 4718592(4608K) max = 4718592(4608K)
Memory Pool: PS Old Gen                       : PS Old Gen: init = 89653248(87552K) used = 27604128(26957K) committed = 89653248(87552K) max = 358088704(349696K)
JVM Input Arguments                           : -Xmx512m -XX:MaxPermSize=256m -Xms128m -XX:PermSize=48m -Dbaseurl=http://Decompiler:2990/jira -Dplugin.root.directories=C:\Users\Ahmet\Developing Env\AtlassianProjects\JiraApp -Dcargo.servlet.uriencoding=UTF-8 -Dcom.atlassian.jira.startup.LauncherContextListener.SYNCHRONOUS=true -Dplugin.resource.directories=C:\Users\Ahmet\Developing Env\AtlassianProjects\JiraApp\src\main\resources,C:\Users\Ahmet\Developing Env\AtlassianProjects\JiraApp\src\test\resources -Datlassian.dev.mode=true -Djava.awt.headless=true -Djira.home=C:/Users/Ahmet/Developing Env/AtlassianProjects/JiraApp/target/jira/home -Dcargo.datasource.datasource=cargo.datasource.url=jdbc:h2:file:C:/Users/Ahmet/Developing Env/AtlassianProjects/JiraApp/target/jira/home/database/h2db|cargo.datasource.driver=org.h2.Driver|cargo.datasource.username=sa|cargo.datasource.password=|cargo.datasource.jndi=jdbc/JiraDS -Datlassian.sdk.version=6.2.11 -Dcatalina.home=C:\Users\Ahmet\Developing Env\AtlassianProjects\JiraApp\target\container\tomcat8x\apache-tomcat-8.0.36 -Dcatalina.base=C:\Users\Ahmet\Developing Env\AtlassianProjects\JiraApp\target\container\tomcat8x\cargo-jira-home -Djava.io.tmpdir=C:\Users\Ahmet\Developing Env\AtlassianProjects\JiraApp\target\container\tomcat8x\cargo-jira-home/temp -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager -Djava.util.logging.config.file=C:\Users\Ahmet\Developing Env\AtlassianProjects\JiraApp\target\container\tomcat8x\cargo-jira-home/conf/logging.properties
Java Compatibility Information                : JIRA version = 7.2.2, Java Version = 1.8.0_25

And my Atlassian-SDK parameters :

ATLAS Version:    6.2.14
ATLAS Home:       C:\Applications\Atlassian\atlassian-plugin-sdk-6.2.14
ATLAS Scripts:    C:\Applications\Atlassian\atlassian-plugin-sdk-6.2.14\bin
ATLAS Maven Home: C:\Applications\Atlassian\atlassian-plugin-sdk-6.2.14\apache-maven-3.2.1
AMPS Version:     6.2.11
--------
Executing: "C:\Applications\Atlassian\atlassian-plugin-sdk-6.2.14\apache-maven-3.2.1\bin\mvn.bat" --
version -gs C:\Applications\Atlassian\atlassian-plugin-sdk-6.2.14\apache-maven-3.2.1/conf/settings.xml
* Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=256M; support was removed in 8.0
* Apache Maven 3.2.3 (33f8c3e1027c3ddde99d3cdebad2656a31e8fdf4; 2014-08-11T23:58:10+03:00)
* Maven home: C:\Users\Ahmet\Developing Env\Apache Maven 3.2.3
* Java version: 1.8.0_25, vendor: Oracle Corporation
* Java home: C:\Program Files\Java\jdk1.8.0_25\jre
* Default locale: tr_TR, platform encoding: Cp1254
* OS name: "windows 8.1", version: "6.3", arch: "amd64", family: "dos"

After i run this command atlas-create-jira-plugin, there is an Jira instance a directory. And than i run atlas-run command and visit localhost:2990/jira; i get this error 

Jıra Startup Failed Error
The following plugins are required by JIRA, but have not been started:

• JIRA Projects Plugin (com.atlassian.jira.jira-projects-plugin)
• Atlassian OAuth Consumer Plugin (com.atlassian.oauth.consumer) and more

And atlassian-jira.log has so many Errors like this (it cant create database and exeute queries)

WARN      [o.o.c.entity.jdbc.DatabaseUtil] Entity "Action" has no table in the database
ERROR     [o.o.c.entity.jdbc.DatabaseUtil] Could not create table "PUBLIC.jiraaction"
ERROR     [o.o.c.entity.jdbc.DatabaseUtil] SQL Exception while executing the following:
CREATE TABLE PUBLIC.jiraaction (ID BIGINT NOT NULL, issueid BIGINT, AUTHOR VARCHAR, actiontype VARCHAR, actionlevel VARCHAR, rolelevel BIGINT, actionbody VARCHAR, CREATED TIMESTAMP, UPDATEAUTHOR VARCHAR, UPDATED TIMESTAMP, actionnum BIGINT, CONSTRAINT PK_jiraaction PRIMARY KEY (ID))
    Error was: org.h2.jdbc.JdbcSQLException: Table "JIRAACTION" already exists; SQL statement:
    CREATE TABLE PUBLIC.jiraaction (ID BIGINT NOT NULL, issueid BIGINT, AUTHOR VARCHAR, actiontype VARCHAR, actionlevel VARCHAR, rolelevel BIGINT, actionbody VARCHAR, CREATED TIMESTAMP, UPDATEAUTHOR VARCHAR, UPDATED TIMESTAMP, actionnum BIGINT, CONSTRAINT PK_jiraaction PRIMARY KEY (ID)) [42101-185]

WARN      [o.o.c.entity.jdbc.DatabaseUtil] Entity "Application" has no table in the database
ERROR     [o.o.c.entity.jdbc.DatabaseUtil] Could not create table "PUBLIC.cwd_application"
ERROR     [o.o.c.entity.jdbc.DatabaseUtil] SQL Exception while executing the following:
   CREATE TABLE PUBLIC.cwd_application (ID BIGINT NOT NULL, application_name VARCHAR, lower_application_name VARCHAR, created_date TIMESTAMP, updated_date TIMESTAMP, active INTEGER, description VARCHAR, application_type VARCHAR, credential VARCHAR, CONSTRAINT PK_cwd_application PRIMARY KEY (ID))
   Error was: org.h2.jdbc.JdbcSQLException: Table "CWD_APPLICATION" already exists; SQL statement:
   CREATE TABLE PUBLIC.cwd_application (ID BIGINT NOT NULL, application_name VARCHAR, lower_application_name VARCHAR, created_date TIMESTAMP, updated_date TIMESTAMP, active INTEGER, description VARCHAR, application_type VARCHAR, credential VARCHAR, CONSTRAINT PK_cwd_application PRIMARY KEY (ID)) [42101-185]

And on a line i see this

h2 is an in-memory database, and susceptible to corruption when abnormally terminated.
DO NOT USE IN PRODUCTION, please switch to a regular database.

WARN      [c.a.p.o.f.transform.stage.ScanDescriptorForHostClassesStage] The plugin 'atlassian-universal-plugin-manager-plugin-2.20.7.jar' uses a package 'org.apache.velocity.tools.generic' that is also exported by the application.  It is highly recommended that the plugin use its own packages.
WARN      [c.a.p.osgi.util.OsgiHeaderUtil] removing duplicate import package com.atlassian.jira.blueprint.api~ for plugin com.atlassian.jira-core-project-templates - it is likely that a duplicate package was supplied in the OSGi instructions in the plugin's MANIFEST.MF
WARN      [c.a.p.osgi.util.OsgiHeaderUtil] removing duplicate import package com.atlassian.jira.projects.shortcuts~ for plugin com.atlassian.jira-core-project-templates - it is likely that a duplicate package was supplied in the OSGi instructions in the plugin's MANIFEST.MF
WARN      [c.a.p.o.f.transform.stage.GenerateManifestStage] Manifest contains a 'Spring-Context:' header with a timeout, namely '*;timeout:=60'. This can cause problems as the timeout is server specific. Use the header 'Spring-Context: *' in the jar 'pdkinstall-plugin-0.6.jar'.

It cant enable plugins

INFO      [c.a.plugin.util.WaitUntil] Plugins that have yet to be enabled: (155): [tac.jira core.languages.ja_JP, com.atlassian.jira.jira-core-reports-plugin, ...... com.atlassian.streams.streams-spi], 60 seconds remaining
INFO      [c.a.plugin.util.WaitUntil] Plugins that have yet to be enabled: (155): [tac.jira core.languages.ja_JP, com.atlassian.jira.jira-core-reports-plugin, ...... com.atlassian.streams.streams-spi], 0 seconds remaining

And more Error cause of it could not create database

ERROR      [c.a.jira.startup.LauncherContextListener] 
Unable to start JIRA.
com.atlassian.jira.exception.DataAccessException: 
org.ofbiz.core.entity.GenericDataSourceException: 
SQL Exception while executing the following:SELECT ID, TYPE, REQUEST_TIME, START_TIME, COMPLETION_TIME, STATUS, EXECUTION_NODE_ID, QUERY FROM PUBLIC.reindex_request WHERE STATUS=? ORDER BY REQUEST_TIME 
(Column "QUERY" not found; SQL statement:
SELECT ID, TYPE, REQUEST_TIME, START_TIME, COMPLETION_TIME, STATUS, EXECUTION_NODE_ID, QUERY FROM PUBLIC.reindex_request WHERE STATUS=? ORDER BY REQUEST_TIME [42122-185])

And last error

WARNING: 'Apache Tomcat/8.0.36' server and the 'org.apache.jasper.runtime.BodyContentImpl.LIMIT_BUFFER' system property is not set to true! This can result in OutOfMemoryErrors. For more information please see {2}.

[somethingblue]

Hi Ahmet,

I'm not sure about the SDK portion, however, from the errors it appears the database is corrupt.  The h2 database is meant to be used internally, however, if you can install a Supported Database and try that you may get better results.

You should have the JIRA application configuration tool, however, if you do not, you can manually edit the dbconfig.xml in the JIRA_HOME directory to change the path and restart JIRA.

Cheers,

Branden

[code-in]

Hi Branden,

Thanks for replying. Yes, database corrupts but i dont know why.
I reboot my computer to a system which is English i mean formatted.

And it works fine now.