Two aspects of the integrity checker are failing with a proxy error.
Check Issue Relations and Check Workflow Integriy both fail with the follwoing message:
The proxy server received an invalid response from an upstream server.
The proxy server could not handle the request POST /jira/secure/admin/IntegrityChecker.jspa.
Reason: Error reading from remote server
Is it possible that your tomcat is behind an apache mod_proxy? In that case I've seen a solution for this previously when a customer has increased the proxytimeout parameter and then bouncing Apache.
Could you please give that a try and let us know how it goes?
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