We are looking into using the Atlassian cloud for Bitbucket, JIRA + JIRA Agile and Confluence.
Is it possible to integrate them (for example linking JIRA issues with Bitbucket pull requests)?
Can they share the same user base? Can I use my company's active directory for them all?
Yes, you can integrate them through application links. Please check the following page: Linking to server applications from your cloud instance
As per the same user base, all cloud applications share the same user base. Unfortunately LDAP integration is not currently provided. There is an improvement request created, though: https://jira.atlassian.com/browse/ID-79
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