Hi Graeme,
Atlassian applications can be connected between each other using the application links.
This is a guide to connect Stash/JIRA:
https://quickstart.atlassian.com/download/stash/jira-integration
And this is to connect Stash with FishEye:
https://confluence.atlassian.com/display/FISHEYE/Integrating+FishEye+with+Stash
Were you able to create this link?
Are you able to see any data from JIRA in Stash or vice-versa?
Please let me know.
Regards,
Celso Yoshioka
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