This is just a quick query I threw together. It returns Stories that have Sub-Tasks; and you can add the Sub-Tasks column to see the Sub-Tasks.
issueFunction IN hasSubtasks() AND issuetype = Story
I'll see if I can come up with one that returns Stories and Sub-Tasks together.
I've found solution:
project = "ProjName" AND ( status in ("To Do", "In Progress", Done) AND type = sub-task AND issueFunction in subtasksOf("status in ('StoryStatus1','StoryStatus2','StoryStatus3')") OR status in ('StoryStatus1','StoryStatus2','StoryStatus3') AND issuetype = Story ) ORDER BY RANK ASC
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