The "Agile" stuff only appears if you have Greenhopper installed and enabled. You could turn it off entirely to completely rid yourself of it, but if you do want some projects to use it, then the best you can do is disable it for those projects. Agile will still appear, along with gadgets etc, but a lot less when users are in none-Agile projects.
I’m a designer on the Jira team. For a long time, I’ve fielded questions from other designers about how they should be using Jira Software with their design team. I’ve also heard feedback from other ...
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