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Get Custom Fields by Project and Issue Type

I am using below code for getting custom fields available for a project and issue type.

ComponentAccessor.getCustomFieldManager().getCustomFieldObjects(project.getId(), issueType) 

The problem is, when I configure my custom field's visibility for a particular project and issue type, I don't get the correct result. But when I configure my custom field for a project only, then I get the correct result. So, there is something wrong when I assign an issue type to it.

Is there any known issue, that custom fields are not correctly returned when they are assigned to issue types? 

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