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recently we have upgraded jira 8.20.7 to 9.4.8 after upgrading in Integrity checker getting below error :
ERROR: Subscription filter with id 11404 is missing its corresponding saved filter and will be removed: FilterSubscription (ID:11404)
It sounds to me like a bug. You probably want to vote for and watch it for updates.
I don't see any workarounds, as this seems to be affecting your work, maybe it might be good to reach out to Support (support.atlassian.com/contact) to see if they have any workarounds for you.