Yes Andre, you can connect Crowd to multiple directories and manage different accounts and groups. You can also select which groups will be able to log into the applications you've set on Crowd.
See this documentation about integrating Crowd with other Atlassian tools: https://confluence.atlassian.com/display/CROWD/Integrating+Crowd+with+Atlassian+Confluence
And please, feel free to ask any other questions here so we can help you
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