I have a workflow transition that is used rarely and is only available to system administrators.
Is there a way to hide this transition on the Workflow diagram?
(Previous edit said "step" when I meant "Transition")
You can try to remove all incoming and outgoing transitions from that step and that way it will be hidden. Also make sure that there are no issues in that status before you remove the outgoing transitions.
In any case, you will not be allowed to edit an active workflow, so you will have to copy it, edit it and migrate your existing project to this new workflow.
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