I'm migrating an old system to a newer JIRA instance which already has issues/ projects. I came across a custom field called Epic, which I am not sure if part of the older version of JIRA Agile (GreenHopper). (In order to maintain the target system's performance, we analyze every new custom field carefully)
Yes, all custom fields created by plugins (such as jira-agile) will be automatically taken care of during the upgrade. You simply need to makesure that you upgrade the plugin version to a version which is compatible to your JIRA version.
You do not need to create any plugin custom field manually.
...PermissionsStartOnly=true User=www-data Group=www-data ExecStart=/opt/jira/bin/startup.sh ExecStop=/opt/jira/bin/shutdown.sh TimeoutStartSec=120 TimeoutStopSec=600 PrivateTmp=true [Install] WantedBy...
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