Issue during upgrade from JIRA 7.13.1 to 8.0.2

Thomas Keßler March 9, 2019

Hi,

I am upgrading the installation. After starting 8.0.2 I see following errors in the logs, JIRA does startup properly. What is do be done now?

 

2019-03-09 11:59:30,979 http-nio-8103-exec-2 ERROR anonymous 719x2x1 - 217.151.148.206,0:0:0:0:0:0:0:1 /secure/johnson/data [c.atlassian.ins
trumentation.Instrument] Unable to snapshot thread local operations (implementation of OpTimerFactory is not a ThreadLocalOpTimerFactory): n
ull
2019-03-09 11:59:30,982 http-nio-8103-exec-2 WARN anonymous 719x2x1 - 217.151.148.206,0:0:0:0:0:0:0:1 /secure/johnson/data [c.a.jira.securit
y.JiraSecurityFilter] Rejecting security-sensitive request that bypassed Johnson filter: /secure/johnson/data
2019-03-09 11:59:31,665 JIRA-Bootstrap ERROR [c.a.plugin.loaders.ScanningPluginLoader] Unable to deploy plugin 'com.atlassian.plugins.a
tlassian-whitelist-ui-plugin' from 'Unit: /home/atlassian/jira/atlassian-jira-software-8.0.2-standalone/atlassian-jira/WEB-INF/atlassian-bun
dled-plugins/atlassian-whitelist-ui-plugin-4.0.7.jar (1551856438000)'.
2019-03-09 11:59:31,666 JIRA-Bootstrap ERROR [c.a.plugin.loaders.ScanningPluginLoader] Because of the following exception:
com.atlassian.plugin.PluginParseException: Unable to process plugin to generate OSGi manifest
at com.atlassian.plugin.osgi.factory.transform.stage.GenerateManifestStage.execute(GenerateManifestStage.java:215)
at com.atlassian.plugin.osgi.factory.transform.DefaultPluginTransformer.transform(DefaultPluginTransformer.java:140)
at com.atlassian.plugin.osgi.factory.OsgiPluginFactory.createOsgiPluginJar(OsgiPluginFactory.java:307)
at com.atlassian.plugin.osgi.factory.OsgiPluginFactory.create(OsgiPluginFactory.java:224)
at com.atlassian.jira.plugin.MasterPluginFactory.create(MasterPluginFactory.java:73)
at com.atlassian.plugin.loaders.ScanningPluginLoader.deployPluginFromUnit(ScanningPluginLoader.java:145)
at com.atlassian.plugin.loaders.ScanningPluginLoader.loadAllPlugins(ScanningPluginLoader.java:90)
at com.atlassian.plugin.loaders.PermissionCheckingPluginLoader.loadAllPlugins(PermissionCheckingPluginLoader.java:28)
at com.atlassian.plugin.manager.DefaultPluginManager.earlyStartup(DefaultPluginManager.java:530)
at com.atlassian.jira.plugin.JiraPluginManager.earlyStartup(JiraPluginManager.java:126)
at com.atlassian.jira.component.pico.ComponentManager$PluginSystem.earlyStartup(ComponentManager.java:669)
at com.atlassian.jira.component.pico.ComponentManager.earlyStartPluginSystem(ComponentManager.java:238)
at com.atlassian.jira.upgrade.PluginSystemLauncher.start(PluginSystemLauncher.java:45)
at com.atlassian.jira.startup.DefaultJiraLauncher.lambda$postDbLaunch$2(DefaultJiraLauncher.java:145)
at com.atlassian.jira.config.database.DatabaseConfigurationManagerImpl.doNowOrEnqueue(DatabaseConfigurationManagerImpl.java:301)
at com.atlassian.jira.config.database.DatabaseConfigurationManagerImpl.doNowOrWhenDatabaseActivated(DatabaseConfigurationManagerImpl.java:196)
at com.atlassian.jira.startup.DefaultJiraLauncher.postDbLaunch(DefaultJiraLauncher.java:137)
at com.atlassian.jira.startup.DefaultJiraLauncher.lambda$start$0(DefaultJiraLauncher.java:104)
at com.atlassian.jira.util.devspeed.JiraDevSpeedTimer.run(JiraDevSpeedTimer.java:31)
at com.atlassian.jira.startup.DefaultJiraLauncher.start(DefaultJiraLauncher.java:102)
at com.atlassian.jira.startup.LauncherContextListener.initSlowStuff(LauncherContextListener.java:154)
at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.lang.IllegalStateException: Calc manifest failed, state=

{Service-Component=, -noee=true, Bundle-Name=com.atlassian.plugins.atlassian-whitelist-ui-plugin, Bundle-Description=The plugin provides a user interface to view and modify the application's whitelist., Bundle-DocURL=https://www.atlassian.com/, Bundle-Vendor=Atlassian, Import-Package=com.atlassian.soy.renderer,com.atlassian.plugin.webresource,com.atlassian.sal.api.message,com.atlassian.sal.api.websudo,com.atlassian.sal.api.user,com.atlassian.sal.api.auth,com.atlassian.applinks.api,com.atlassian.plugins.whitelist,*;resolution:="optional", Spring-Context=*;timeout:=300, Export-Package=!atlassian-plugin.xml,, Bundle-SymbolicName=com.atlassian.plugins.atlassian-whitelist-ui-plugin, Bundle-Version=4.0.7, -removeheaders=Include-Resource, Atlassian-Plugin-Key=com.atlassian.plugins.atlassian-whitelist-ui-plugin, Bundle-ClassPath=.}
at aQute.bnd.osgi.Analyzer.calcManifest(Analyzer.java:901)
at com.atlassian.plugin.osgi.factory.transform.stage.GenerateManifestStage.execute(GenerateManifestStage.java:191)
... 21 more
Caused by: java.lang.IllegalStateException: Unknown protocol: jrt
at org.apache.felix.framework.URLHandlersStreamHandlerProxy.toExternalForm(URLHandlersStreamHandlerProxy.java:474)
at java.base/java.net.URL.toExternalForm(URL.java:1001)
at java.base/java.net.URL.toString(URL.java:987)
at org.apache.felix.framework.URLHandlersStreamHandlerProxy.openConnection(URLHandlersStreamHandlerProxy.java:267)
at java.base/java.net.URL.openConnection(URL.java:1051)
at aQute.bnd.osgi.URLResource.openConnection(URLResource.java:49)
at aQute.bnd.osgi.URLResource.getBuffer(URLResource.java:39)
at aQute.bnd.osgi.URLResource.buffer(URLResource.java:27)
at aQute.bnd.osgi.Clazz.parseClassFileWithCollector(Clazz.java:492)
at aQute.bnd.osgi.Clazz.parseClassFile(Clazz.java:484)
at aQute.bnd.osgi.Analyzer.findClass(Analyzer.java:2742)
at aQute.bnd.osgi.Analyzer.isProvider(Analyzer.java:1827)
at aQute.bnd.osgi.Analyzer.findProvidedPackages(Analyzer.java:1818)
at aQute.bnd.osgi.Analyzer.augmentImports(Analyzer.java:1673)
at aQute.bnd.osgi.Analyzer.analyze(Analyzer.java:305)
at aQute.bnd.osgi.Builder.analyze(Builder.java:387)
at aQute.bnd.osgi.Analyzer.calcManifest(Analyzer.java:694)
... 22 more

 

2019-03-09 12:00:04,402 JIRA-Bootstrap ERROR [c.a.jira.startup.SystemPluginsEnabledHealthCheck] We couldn't start the following plugins
:
- com.atlassian.jira.jira-quick-edit-plugin (com.atlassian.jira.jira-quick-edit-plugin)
- com.atlassian.jira.lookandfeel (com.atlassian.jira.lookandfeel)

2019-03-09 12:00:04,414 JIRA-Bootstrap ERROR [c.a.jira.health.HealthChecks] We haven't been able to start all the required system plugi
ns
2019-03-09 12:00:04,414 JIRA-Bootstrap ERROR [c.a.jira.health.HealthChecks] We couldn't start the following plugins:
- com.atlassian.jira.jira-quick-edit-plugin (com.atlassian.jira.jira-quick-edit-plugin)
- com.atlassian.jira.lookandfeel (com.atlassian.jira.lookandfeel)

 

2019-03-09 12:00:06,243 JIRA-Bootstrap ERROR [c.a.jira.startup.DefaultJiraLauncher] JIRA has failed to start because of the following e
rrors: [(Event: Level = (EventLevel: fatal) , Key = (EventType: system-plugins) , Desc = We haven't been able to start all the required syst
em plugins , Exception = We couldn't start the following plugins:<br/><ul><li>com.atlassian.jira.jira-quick-edit-plugin (com.atlassian.jira.
jira-quick-edit-plugin)</li><li>com.atlassian.jira.lookandfeel (com.atlassian.jira.lookandfeel)</li></ul>)]

 

3 answers

0 votes
Thomas Keßler March 11, 2019

It works with JDK8...

0 votes
Thomas Keßler March 11, 2019

I am using standalone OpenJDK11.0.2, PostgreSQL - 10.6, Ubuntu 18.04.2.

0 votes
JP _AC Bielefeld Leader_
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March 9, 2019

Seems to be a protocol error (jrt). Are you using the bundled Java DK or a standalone Java? What OS are you using? What database are you using?

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