The best answer way given by Andre Borzzatto form atlassian, here is the link: https://answers.atlassian.com/questions/10392768/project-template i will look further to find another solution for you, still the cloud version clearly have some issue when it comme to customizing.
...PermissionsStartOnly=true User=www-data Group=www-data ExecStart=/opt/jira/bin/startup.sh ExecStop=/opt/jira/bin/shutdown.sh TimeoutStartSec=120 TimeoutStopSec=600 PrivateTmp=true [Install] WantedBy...
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