There is a known issue with JIRA Agile 6.4 to 6.6. Check out the warning on the release notes.
Other than that, I am not aware of any issues although having thousands of issues in the backlog or in the board itself is not a good idea.
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...PermissionsStartOnly=true User=www-data Group=www-data ExecStart=/opt/jira/bin/startup.sh ExecStop=/opt/jira/bin/shutdown.sh TimeoutStartSec=120 TimeoutStopSec=600 PrivateTmp=true [Install] WantedBy...
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