What would happen if we migrate a project that includes an unsupported add-on?

We are considering moving from an on-premise server to the Cloud version.

What would happen if we migrate a project that includes an unsupported add-on? Will the migration fail? Will the project operate fine except for the add-on functionality? Should we disable the unsupported add-ons before the migration?

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The migration will not fail but you will not receive any of the functionality that the add-on gave you. I would attempt to disable the add-on before you migrate just to see what your instance data will look like post-migration.

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