A user story may have multiple sub-tasks. It may also be linked to other things such as tasks at the same level, Epics above it or even sub-tasks on other issues, but these links are informational, they do not mean that anything linked "belongs" to the story.
You can put a user story into a Sprint. It takes its subtasks with it, but not linked issues.
You can put a user story, and sub-tasks into any version or versions you need to.
I have multiple projects that use variations of the same base workflow. The variations depend on the requirements of the project or issue type. The variations mostly come in the form of new statuses ...
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