You could try commenting or voting on the suggestion / question on Flowdock's own issue tracker here: https://flowdock.uservoice.com/forums/36827-general/suggestions/17372401-add-support-for-confluence-server-version-5-10-x-a
They are probably more likely to answer there than on this forum.
I have multiple projects that use variations of the same base workflow. The variations depend on the requirements of the project or issue type. The variations mostly come in the form of new statuses ...
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