FishEye does support GIT and others VCS's like Mercurial and Perforce as you can see at our Supported Platforms session. Could you describe the steps you're using to add your repository? I'm asking that because at FishEye Administration -> Repositories, when you're adding a repo the system asks you what kind of repository it is and then you can choose if it's P4, mercurial, git, svn...
We have a complete documentation about all configurations and features inside our Knowledge Base home please take some time to look at it. More specifically about Adding an External Repository please take a look at this article. And remeber to access FishEye Administration you just have to access http://your-fisheye-address:8060/admin
I hope this could help you.
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