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Upgrade from 3.3.1 to 3.5.17 fails with mysql

Kyung Min Jo May 13, 2014

I made all custom changes (server.xml, setenv.sh, atlassian-user.xml) and started the new Confluence-Version.

The upgrade stops with an db-error.

I will attach the complete Log-file

Kind regards

2014-05-14 14:39:00,239 ERROR [main] [hibernate.tool.hbm2ddl.SchemaUpdate] execute Unsuccessful: alter table os_user_group add index FK93247246F73AEE0F (user_id), add constraint FK93247246F73AEE0F foreign key (user_id) references os_user (id)

2014-05-14 14:39:00,244 ERROR [main] [hibernate.tool.hbm2ddl.SchemaUpdate] execute Can't write; duplicate key in table '#sql-a0a_23da86'

2014-05-14 14:39:00,245 ERROR [main] [hibernate.tool.hbm2ddl.SchemaUpdate] execute could not complete schema update

com.mysql.jdbc.exceptions.jdbc4.MySQLIntegrityConstraintViolationException: Can't write; duplicate key in table '#sql-a0a_23da86'

at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)

at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)

at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)

at java.lang.reflect.Constructor.newInstance(Constructor.java:526)

at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)

at com.mysql.jdbc.Util.getInstance(Util.java:386)

at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1039)

at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3597)

at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3529)

at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:1990)

at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2151)

at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2619)

at com.mysql.jdbc.StatementImpl.executeUpdate(StatementImpl.java:1709)

at com.mysql.jdbc.StatementImpl.executeUpdate(StatementImpl.java:1628)

at org.apache.tomcat.dbcp.dbcp.DelegatingStatement.executeUpdate(DelegatingStatement.java:228)

at org.apache.tomcat.dbcp.dbcp.DelegatingStatement.executeUpdate(DelegatingStatement.java:228)

at net.sf.hibernate.tool.hbm2ddl.SchemaUpdate.execute(SchemaUpdate.java:167)

at bucket.core.persistence.hibernate.schema.SchemaHelper.updateSchemaIfNeeded(SchemaHelper.java:161)

at bucket.core.persistence.hibernate.schema.SchemaHelper.updateSchemaIfNeeded(SchemaHelper.java:134)

at com.atlassian.confluence.upgrade.AbstractUpgradeManager.upgrade(AbstractUpgradeManager.java:91)

at com.atlassian.confluence.upgrade.impl.DefaultUpgradeManager.upgrade(DefaultUpgradeManager.java:140)

at com.atlassian.confluence.upgrade.UpgradeLauncherServletContextListener.contextInitialized(UpgradeLauncherServletContextListener.java:28)

at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4205)

at org.apache.catalina.core.StandardContext.start(StandardContext.java:4704)

at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1053)

at org.apache.catalina.core.StandardHost.start(StandardHost.java:840)

at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1053)

at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:463)

at org.apache.catalina.core.StandardService.start(StandardService.java:525)

at org.apache.catalina.core.StandardServer.start(StandardServer.java:754)

at org.apache.catalina.startup.Catalina.start(Catalina.java:595)

at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)

at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.lang.reflect.Method.invoke(Method.java:606)

at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289)

at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414)

2014-05-14 14:39:00,264 ERROR [main] [atlassian.confluence.upgrade.UpgradeLauncherServletContextListener] contextInitialized Upgrade failed, application will not start: com.atlassian.config.ConfigurationException: Cannot update schema

com.atlassian.confluence.upgrade.UpgradeException: com.atlassian.config.ConfigurationException: Cannot update schema

at com.atlassian.confluence.upgrade.AbstractUpgradeManager.upgrade(AbstractUpgradeManager.java:111)

at com.atlassian.confluence.upgrade.impl.DefaultUpgradeManager.upgrade(DefaultUpgradeManager.java:140)

at com.atlassian.confluence.upgrade.UpgradeLauncherServletContextListener.contextInitialized(UpgradeLauncherServletContextListener.java:28)

at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4205)

at org.apache.catalina.core.StandardContext.start(StandardContext.java:4704)

at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1053)

at org.apache.catalina.core.StandardHost.start(StandardHost.java:840)

at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1053)

at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:463)

at org.apache.catalina.core.StandardService.start(StandardService.java:525)

at org.apache.catalina.core.StandardServer.start(StandardServer.java:754)

at org.apache.catalina.startup.Catalina.start(Catalina.java:595)

at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)

at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.lang.reflect.Method.invoke(Method.java:606)

at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289)

at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414)

Caused by: com.atlassian.config.ConfigurationException: Cannot update schema

at bucket.core.persistence.hibernate.schema.SchemaHelper.updateSchemaIfNeeded(SchemaHelper.java:165)

at bucket.core.persistence.hibernate.schema.SchemaHelper.updateSchemaIfNeeded(SchemaHelper.java:134)

at com.atlassian.confluence.upgrade.AbstractUpgradeManager.upgrade(AbstractUpgradeManager.java:91)

... 17 more

Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLIntegrityConstraintViolationException: Can't write; duplicate key in table '#sql-a0a_23da86'

at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)

at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)

at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)

at java.lang.reflect.Constructor.newInstance(Constructor.java:526)

at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)

at com.mysql.jdbc.Util.getInstance(Util.java:386)

at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1039)

at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3597)

at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3529)

at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:1990)

at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2151)

at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2619)

at com.mysql.jdbc.StatementImpl.executeUpdate(StatementImpl.java:1709)

at com.mysql.jdbc.StatementImpl.executeUpdate(StatementImpl.java:1628)

at org.apache.tomcat.dbcp.dbcp.DelegatingStatement.executeUpdate(DelegatingStatement.java:228)

at org.apache.tomcat.dbcp.dbcp.DelegatingStatement.executeUpdate(DelegatingStatement.java:228)

at net.sf.hibernate.tool.hbm2ddl.SchemaUpdate.execute(SchemaUpdate.java:167)

at bucket.core.persistence.hibernate.schema.SchemaHelper.updateSchemaIfNeeded(SchemaHelper.java:161)

... 19 more

2014-05-14 14:39:00,269 ERROR [main] [atlassian.confluence.upgrade.UpgradeLauncherServletContextListener] contextInitialized 1 errors were encountered during upgrade:

2014-05-14 14:39:00,269 ERROR [main] [atlassian.confluence.upgrade.UpgradeLauncherServletContextListener] contextInitialized 1: Cannot update schema

1 answer

0 votes
Fabio Racobaldo _Herzum_
Community Leader
Community Leader
Community Leaders are connectors, ambassadors, and mentors. On the online community, they serve as thought leaders, product experts, and moderators.
May 13, 2014

Hi Kyung,

you should copy the existing <Installation-Directory>/confluence/WEB-INF/classes/osuser.xml file into the new 3.5.17 installation folder. Please, follow these complete upgrade guide https://confluence.atlassian.com/display/CONF35/Upgrading+Confluence+Standalone+Distribution

Hope this helps,

Fabio

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