Table 'confluence.SPACEPERMISSIONS' doesn't exist

After a server failure (both disks in a raid1 with severe errors) I had to recover from file backups and mysql dumps. This worked for JIRA 7, but not for Confluence 6 (which takes user credentials from Jira).

I tried an upgrade with the current Confluence Server file (6.3.1) which went through smoothly. However, I now get the error message (redirected from http://dmft.org:8090):

http://dmft.org:8090/errors.jsp "Oops - an error has occurred - Confluence"

logoSystem Error

A system error has occurred — our apologies!

For immediate troubleshooting, consult our knowledge base for a solution.

If you would like to receive support from Atlassian's support team, ask your Confluence administrator to create a support issue on Atlassian's support system with the following information:

  1. a description of your problem and what you were doing at the time it occurred
  2. a copy of the error and system information found below
  3. a copy of the application logs (if possible).

Your Confluence administrator can use the support request form to create a support ticket which will include this information.

We will respond as promptly as possible.
Thank you!

Return to site homepage…

Cause

java.lang.reflect.UndeclaredThrowableException
    at com.sun.proxy.$Proxy97.permissionExists(Unknown Source)

caused by: java.lang.reflect.InvocationTargetException
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

caused by: org.springframework.dao.InvalidDataAccessResourceUsageException: could not extract ResultSet; SQL [n/a]; nested exception is org.hibernate.exception.SQLGrammarException: could not extract ResultSet
    at org.springframework.orm.hibernate5.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:224)

caused by: org.hibernate.exception.SQLGrammarException: could not extract ResultSet
    at org.hibernate.exception.internal.SQLExceptionTypeDelegate.convert(SQLExceptionTypeDelegate.java:63)

caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Table 'confluence.SPACEPERMISSIONS' doesn't exist
    at sun.reflect.GeneratedConstructorAccessor305.newInstance(Unknown Source)

Stack Trace:[hide]

java.lang.reflect.UndeclaredThrowableException
	at com.sun.proxy.$Proxy97.permissionExists(Unknown Source)
	at com.atlassian.confluence.security.access.DefaultConfluenceAccessManager.hasGlobalPermissionAsUser(DefaultConfluenceAccessManager.java:122)
...	at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
	at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.reflect.InvocationTargetException
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at com.atlassian.confluence.impl.security.SpacePermissionManagerFactory.lambda$new$0(SpacePermissionManagerFactory.java:70)
	... 306 more
Caused by: org.springframework.dao.InvalidDataAccessResourceUsageException: could not extract ResultSet; SQL [n/a]; nested exception is org.hibernate.exception.SQLGrammarException: could not extract ResultSet
	at org.springframework.orm.hibernate5.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:224)
	at org.springframework.orm.hibernate5.HibernateTemplate.doExecute(HibernateTemplate.java:366)
	at org.springframework.orm.hibernate5.HibernateTemplate.execute(HibernateTemplate.java:313)
	at com.atlassian.confluence.security.persistence.dao.hibernate.HibernateSpacePermissionDao.executeSpacePermissionQueryBySubject(HibernateSpacePermissionDao.java:135)
	at com.atlassian.confluence.security.persistence.dao.hibernate.HibernateSpacePermissionDao.hasPermission(HibernateSpacePermissionDao.java:37)
	at com.atlassian.confluence.security.CachingSpacePermissionManager.findCachedPermissionOrFetchFromDao(CachingSpacePermissionManager.java:178)
	at com.atlassian.confluence.security.CachingSpacePermissionManager.permissionExists(CachingSpacePermissionManager.java:117)
	... 311 more
Caused by: org.hibernate.exception.SQLGrammarException: could not extract ResultSet
	at org.hibernate.exception.internal.SQLExceptionTypeDelegate.convert(SQLExceptionTypeDelegate.java:63)
	at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:42)
	at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:111)
	at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:97)
	at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.extract(ResultSetReturnImpl.java:79)
	at org.hibernate.loader.Loader.getResultSet(Loader.java:2123)
	at org.hibernate.loader.Loader.executeQueryStatement(Loader.java:1911)
	at org.hibernate.loader.Loader.executeQueryStatement(Loader.java:1887)
	at org.hibernate.loader.Loader.doQuery(Loader.java:932)
	at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:349)
	at org.hibernate.loader.Loader.doList(Loader.java:2615)
	at org.hibernate.loader.Loader.doList(Loader.java:2598)
	at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2430)
	at org.hibernate.loader.Loader.list(Loader.java:2425)
	at org.hibernate.loader.hql.QueryLoader.list(QueryLoader.java:502)
	at org.hibernate.hql.internal.ast.QueryTranslatorImpl.list(QueryTranslatorImpl.java:371)
	at org.hibernate.engine.query.spi.HQLQueryPlan.performList(HQLQueryPlan.java:216)
	at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1458)
	at org.hibernate.query.internal.AbstractProducedQuery.doList(AbstractProducedQuery.java:1426)
	at org.hibernate.query.internal.AbstractProducedQuery.list(AbstractProducedQuery.java:1398)
	at com.atlassian.confluence.security.persistence.dao.hibernate.HibernateSpacePermissionDao.lambda$executeSpacePermissionQueryBySubject$3(HibernateSpacePermissionDao.java:153)
	at org.springframework.orm.hibernate5.HibernateTemplate.doExecute(HibernateTemplate.java:359)
	... 316 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Table 'confluence.SPACEPERMISSIONS' doesn't exist
	at sun.reflect.GeneratedConstructorAccessor305.newInstance(Unknown Source)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
	at com.mysql.jdbc.Util.handleNewInstance(Util.java:377)
	at com.mysql.jdbc.Util.getInstance(Util.java:360)
	at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:978)
	at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3887)
	at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3823)
	at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2435)
	at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582)
	at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2530)
	at com.mysql.jdbc.PreparedStatement.executeInternal(PreparedStatement.java:1907)
	at com.mysql.jdbc.PreparedStatement.executeQuery(PreparedStatement.java:2030)
	at com.mchange.v2.c3p0.impl.NewProxyPreparedStatement.executeQuery(NewProxyPreparedStatement.java:379)
	at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.extract(ResultSetReturnImpl.java:70)
	... 333 more

        

Referer URL

Unknown

 

1 answer

I found out that the MySQL dump (which contains tables in alphabetic order) was incomplete. I will try to recover from an earlier backup of /var/mysql.

Hi @Nils Bluemer ,

 

Could you please let us know if recovering from earlier backup worked for you?

We are facing same issue : We upgraded to confluence 6 from 5.8.X

Error : 

 

caused by: org.hibernate.exception.SQLGrammarException: could not extract ResultSet     

at org.hibernate.exception.internal.SQLStateConversionDelegate.convert(SQLStateConversionDelegate.java:106) caused by: org.postgresql.util.PSQLException: ERROR: column spacepermi0_.permalluserssubject does not exist Position: 211     
at org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2476)

Suggest an answer

Log in or Sign up to answer
Atlassian Community Anniversary

Happy Anniversary, Atlassian Community!

This community is celebrating its one-year anniversary and Atlassian co-founder Mike Cannon-Brookes has all the feels.

Read more
Community showcase
Kesha Thillainayagam
Posted Apr 13, 2018 in Confluence

We want to hear how your non-technical teams are using Confluence!

Hi Community! Kesha (kay-sha) from the Confluence marketing team here! Can you share stories with us on how your non-technical (think Marketing, Sales, HR, legal, etc.) teams are using Confluen...

359 views 20 10
Join discussion

Atlassian User Groups

Connect with like-minded Atlassian users at free events near you!

Find a group

Connect with like-minded Atlassian users at free events near you!

Find my local user group

Unfortunately there are no AUG chapters near you at the moment.

Start an AUG

You're one step closer to meeting fellow Atlassian users at your local meet up. Learn more about AUGs

Groups near you