I have Confluence and JIRA installed on the same server, both configured for SSL. However, the DNS Url for Confluence redirects to Jira. JIRA runs fine.
Below solution may help you..
You can run Apache server on 443/8443 for SSL & configure redirection of JIRA and Confluence context to the respective tomcats where JIRA & confluence is running.
Run JIRA on 8080 (you can change this any port) & Confluence on 8090 (you can change this any port)
Assume your domain name is https://atlassianproducts.myorg.com/
https://atlassianproducts.myorg.com/confluence - Confluence
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