I want to migrate a few spaces from one confluence server to another and I am aware of the export/import feature.
My question is that can i migration from version 5.4 -> 5.9 Versions?
I have tried it and it did not give any errors.
What other problems i may face?
There's no problem migrating singles spaces to the 5.9 version. Here's what your Confluence version is saying in the 5.9 Backup & Restore's page:
"This site accepts full site imports from Confluence 4.0 and later, and space imports from Confluence 5.3 and later."
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