What could be done in this kind of situation?
As I unsertand, the paths of source codes, are being saved in instrumented jars, so later on they can be used during reports generation(clover), to have the correct links. In this case, when during reports generation it tries to find source codes (java files), it fails, as the sources are located in Machine A but not on machineB.
You can make it other way, i.e. when tests are finished you can copy clover directory (containing clover.db and coverage files) from machine B back to machine A where sources are located.
You can also disable source files access during report generation.
Some more information:
https://answers.atlassian.com/questions/14895/source-path-for-clover-report<br< a="">>https://answers.atlassian.com/questions/240733/are-source-files-mandatory-for-clover-report<br< a="">>
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