Unable to upgrade Stash install from 2.9.3 to 2.10.1

[Pierre Zurmely]

Hello,

I am trying to upgrade my Stash server from version 2.9.3 to 2.10.1, but each time i am trying this, I'm stuck , stash service doesn't respond anymore.

I have tryed to go from 2.9.3 to 2.9.4, to start only with LDAP users, to remove all the plug Ins, all unssucessfully.

Do you have any idea of what happen?

I have the following log:

2014-02-17 17:03:09,183 INFO [localhost-startStop-2] c.a.s.i.server.BuildInfoLogger Stash 2.9.3 has shut down
2014-02-17 17:04:25,607 INFO [localhost-startStop-1] c.a.s.i.server.BuildInfoLogger Starting Stash 2.10.1 (f584ca6 built on Tue Dec 31 03:18:44 UTC 2013)
2014-02-17 17:04:25,613 INFO [localhost-startStop-1] c.a.s.i.server.BuildInfoLogger JVM: Oracle Corporation Java HotSpot(TM) 64-Bit Server VM 1.7.0_21-b11
2014-02-17 17:04:27,812 INFO [localhost-startStop-1] c.a.s.internal.home.HomeLockAcquirer Successfully acquired lock on home directory /farequote/stash/stash-home for 29346@ncepspa162.nce.amadeus.net
2014-02-17 17:04:56,710 INFO [localhost-startStop-1] c.a.s.i.hook.DefaultHookService Hook callback socket listening on 127.0.0.1:58911
2014-02-17 17:05:03,261 WARN [localhost-startStop-1] c.a.p.o.f.t.s.GenerateManifestStage The Spring Manifest header in jar 'applinks-plugin-4.0.10.jar' isn't set for a 300 second timeout waiting for dependencies. Please add ';timeout:=300'
2014-02-17 17:05:06,463 WARN [localhost-startStop-1] c.a.p.o.f.t.s.GenerateManifestStage The Spring Manifest header in jar 'atlassian-pretty-urls-plugin-1.9.jar' isn't set for a 300 second timeout waiting for dependencies. Please add ';timeout:=300'
2014-02-17 17:05:06,879 WARN [localhost-startStop-1] c.a.p.o.f.t.s.GenerateManifestStage The Spring Manifest header in jar 'atlassian-rest-module-2.8.2.jar' isn't set for a 300 second timeout waiting for dependencies. Please add ';timeout:=300'
2014-02-17 17:05:07,593 WARN [localhost-startStop-1] c.a.p.o.f.t.s.GenerateManifestStage The Spring Manifest header in jar 'atlassian-template-renderer-api-1.5.1.jar' isn't set for a 300 second timeout waiting for dependencies. Please add ';timeout:=300'
2014-02-17 17:05:07,683 WARN [localhost-startStop-1] c.a.p.o.f.t.s.GenerateManifestStage The Spring Manifest header in jar 'atlassian-template-renderer-velocity16-plugin-1.5.1.jar' isn't set for a 300 second timeout waiting for dependencies. Please add ';timeout:=300'
2014-02-17 17:05:08,442 WARN [localhost-startStop-1] c.a.p.o.f.t.s.ScanDescriptorForHostClassesStage The plugin 'atlassian-universal-plugin-manager-plugin-2.14.4.jar' uses a package 'org.apache.commons.fileupload.servlet' that is also exported by the application. It is highly recommended that the plugin use its own packages.
2014-02-17 17:05:09,362 WARN [localhost-startStop-1] c.a.p.o.f.t.s.GenerateManifestStage The Spring Manifest header in jar 'atlassian-webhooks-plugin-0.17.3.jar' isn't set for a 300 second timeout waiting for dependencies. Please add ';timeout:=300'
2014-02-17 17:05:26,511 WARN [ThreadPoolAsyncTaskExecutor::Thread 3] o.s.beans.TypeConverterDelegate PropertyEditor [com.sun.beans.editors.EnumEditor] found through deprecated global PropertyEditorManager fallback - consider using a more isolated form of registration, e.g. on the BeanWrapper/BeanFactory!
2014-02-17 17:06:00,418 WARN [active-objects-ddl-0] c.a.a.o.AOConfigurationServiceProviderImpl Timeout (30000 MILLISECONDS) waiting for ActiveObjectConfiguration for Bundle : de.communardo.plugin.stash-project-categories [93].
To avoid this warning add an ao configuration module to your plugin
2014-02-17 17:06:00,423 WARN [active-objects-ddl-0] c.a.a.o.AOConfigurationServiceProviderImpl Didn't find any configuration service for bundle de.communardo.plugin.stash-project-categories nor any entities scanning for default AO packages.
2014-02-17 17:06:00,426 WARN [ListenableFutureAdapter-thread-0] c.a.a.o.ActiveObjectsServiceFactory Resubmitting AO bundle with longer timeout 180000 ms for bundle : de.communardo.plugin.stash-project-categories [93]
2014-02-17 17:06:01,661 INFO [localhost-startStop-1] c.a.s.internal.scm.PluginScmService Stash is using /farequote/git/current/bin/git version 1.8.3
2014-02-17 17:06:03,121 WARN [active-objects-ddl-0] net.java.ao.schema.SchemaGenerator public abstract de.communardo.plugin.stash.projectcategories.model.ao.Category[] de.communardo.plugin.stash.projectcategories.model.ao.Project.getCategories() does not have a value specified for the reverse element of its ManyToMany annotation. A value will be required by a future version of ActiveObjects.
2014-02-17 17:06:03,121 WARN [active-objects-ddl-0] net.java.ao.schema.SchemaGenerator public abstract de.communardo.plugin.stash.projectcategories.model.ao.Category[] de.communardo.plugin.stash.projectcategories.model.ao.Project.getCategories() does not have a value specified for the through element of its ManyToMany annotation. A value will be required by a future version of ActiveObjects.
2014-02-17 17:06:03,122 WARN [active-objects-ddl-0] net.java.ao.schema.SchemaGenerator public abstract de.communardo.plugin.stash.projectcategories.model.ao.Project[] de.communardo.plugin.stash.projectcategories.model.ao.Category.getProjects() does not have a value specified for the reverse element of its ManyToMany annotation. A value will be required by a future version of ActiveObjects.
2014-02-17 17:06:03,122 WARN [active-objects-ddl-0] net.java.ao.schema.SchemaGenerator public abstract de.communardo.plugin.stash.projectcategories.model.ao.Project[] de.communardo.plugin.stash.projectcategories.model.ao.Category.getProjects() does not have a value specified for the through element of its ManyToMany annotation. A value will be required by a future version of ActiveObjects.
2014-02-17 17:06:03,123 WARN [active-objects-ddl-0] net.java.ao.schema.SchemaGenerator public abstract de.communardo.plugin.stash.projectcategories.model.ao.Category[] de.communardo.plugin.stash.projectcategories.model.ao.Project.getCategories() does not have a value specified for the reverse element of its ManyToMany annotation. A value will be required by a future version of ActiveObjects.
2014-02-17 17:06:03,124 WARN [active-objects-ddl-0] net.java.ao.schema.SchemaGenerator public abstract de.communardo.plugin.stash.projectcategories.model.ao.Category[] de.communardo.plugin.stash.projectcategories.model.ao.Project.getCategories() does not have a value specified for the through element of its ManyToMany annotation. A value will be required by a future version of ActiveObjects.
2014-02-17 17:06:03,125 WARN [active-objects-ddl-0] net.java.ao.schema.SchemaGenerator public abstract de.communardo.plugin.stash.projectcategories.model.ao.Project[] de.communardo.plugin.stash.projectcategories.model.ao.Category.getProjects() does not have a value specified for the reverse element of its ManyToMany annotation. A value will be required by a future version of ActiveObjects.
2014-02-17 17:06:03,125 WARN [active-objects-ddl-0] net.java.ao.schema.SchemaGenerator public abstract de.communardo.plugin.stash.projectcategories.model.ao.Project[] de.communardo.plugin.stash.projectcategories.model.ao.Category.getProjects() does not have a value specified for the through element of its ManyToMany annotation. A value will be required by a future version of ActiveObjects.
2014-02-17 17:07:41,675 WARN [scheduler_Worker-4] c.a.c.d.l.c.AbstractCacheRefresher group [UG-SRC-CVS-ncefop1-Admin] duplicated in remote directory. Ignoring group.
2014-02-17 17:07:41,676 WARN [scheduler_Worker-4] c.a.c.d.l.c.AbstractCacheRefresher group [UG-SRC-CVS-ncefop1] duplicated in remote directory. Ignoring group.
2014-02-17 17:07:41,680 WARN [scheduler_Worker-4] c.a.c.d.l.c.AbstractCacheRefresher group [cvsadmin] duplicated in remote directory. Ignoring group.
2014-02-17 17:07:41,681 WARN [scheduler_Worker-4] c.a.c.d.l.c.AbstractCacheRefresher group [MUC-Hlp-Users] duplicated in remote directory by group [MUC-HLP-Users]. Ignoring group.
2014-02-17 17:07:41,684 WARN [scheduler_Worker-4] c.a.c.d.l.c.AbstractCacheRefresher group [AIT] duplicated in remote directory by group [ait]. Ignoring group.
2014-02-17 17:07:41,686 WARN [scheduler_Worker-4] c.a.c.d.l.c.AbstractCacheRefresher group [zone_nis_servers] duplicated in remote directory. Ignoring group.
2014-02-17 17:07:44,062 WARN [scheduler_Worker-4] c.a.c.d.DbCachingRemoteChangeOperations remote group name [ NCE-Ops-IAM-Operators ] casing differs from local group name [ NCE-ops-IAM-operators ]. Group details will be kept updated, but the group name cannot be updated
2014-02-17 17:07:44,149 WARN [scheduler_Worker-4] c.a.c.d.DbCachingRemoteChangeOperations remote group name [ Central-Ops-SSO-Admins ] casing differs from local group name [ central-ops-sso-admins ]. Group details will be kept updated, but the group name cannot be updated
2014-02-17 17:07:44,176 WARN [scheduler_Worker-4] c.a.c.d.DbCachingRemoteChangeOperations remote group name [ MIA-FUNC-DEV-PSP-PSR-BOS ] casing differs from local group name [ MIA-Func-DEV-PSP-PSR-BOS ]. Group details will be kept updated, but the group name cannot be updated
2014-02-17 17:07:44,191 WARN [scheduler_Worker-4] c.a.c.d.DbCachingRemoteChangeOperations remote group name [ NCE-UNION-COMPUTERS ] casing differs from local group name [ NCE-Union-Computers ]. Group details will be kept updated, but the group name cannot be updated
2014-02-17 17:07:44,192 WARN [scheduler_Worker-4] c.a.c.d.DbCachingRemoteChangeOperations remote group name [ NCE-EMPLOYEES-NOA ] casing differs from local group name [ NCE-Employees-NOA ]. Group details will be kept updated, but the group name cannot be updated
2014-02-17 17:07:44,193 WARN [scheduler_Worker-4] c.a.c.d.DbCachingRemoteChangeOperations remote group name [ NCE-EMPLOYEES-GIA ] casing differs from local group name [ NCE-Employees-GIA ]. Group details will be kept updated, but the group name cannot be updated
2014-02-17 17:07:44,193 WARN [scheduler_Worker-4] c.a.c.d.DbCachingRemoteChangeOperations remote group name [ NCE-AMADEUSRAILIT-YYZ ] casing differs from local group name [ NCE-AmadeusRailIT-YYZ ]. Group details will be kept updated, but the group name cannot be updated
2014-02-17 17:07:44,196 WARN [scheduler_Worker-4] c.a.c.d.DbCachingRemoteChangeOperations remote group name [ NCE-EMPLOYEES-MAP ] casing differs from local group name [ NCE-Employees-MAP ]. Group details will be kept updated, but the group name cannot be updated
2014-02-17 17:07:44,197 WARN [scheduler_Worker-4] c.a.c.d.DbCachingRemoteChangeOperations remote group name [ NCE-EMPLOYEES-CTO ] casing differs from local group name [ NCE-Employees-CTO ]. Group details will be kept updated, but the group name cannot be updated
2014-02-17 17:07:44,197 WARN [scheduler_Worker-4] c.a.c.d.DbCachingRemoteChangeOperations remote group name [ NCE-EMPLOYEES-GBS ] casing differs from local group name [ NCE-Employees-GBS ]. Group details will be kept updated, but the group name cannot be updated
2014-02-17 17:07:44,197 WARN [scheduler_Worker-4] c.a.c.d.DbCachingRemoteChangeOperations remote group name [ NCE-BLADMINS ] casing differs from local group name [ NCE-BLAdmins ]. Group details will be kept updated, but the group name cannot be updated
2014-02-17 17:07:44,198 WARN [scheduler_Worker-4] c.a.c.d.DbCachingRemoteChangeOperations remote group name [ NCE-EMPLOYEES-CST ] casing differs from local group name [ NCE-Employees-CST ]. Group details will be kept updated, but the group name cannot be updated
2014-02-17 17:07:44,198 WARN [scheduler_Worker-4] c.a.c.d.DbCachingRemoteChangeOperations remote group name [ NCE-EMPLOYEES-CFA ] casing differs from local group name [ NCE-Employees-CFA ]. Group details will be kept updated, but the group name cannot be updated
2014-02-17 17:11:12,111 ERROR [scheduler_Worker-4] c.a.c.d.DbCachingDirectoryPoller Error occurred while refreshing the cache for directory [ 294913 ].
org.hibernate.NonUniqueResultException: query did not return a unique result: 2
at org.hibernate.internal.AbstractQueryImpl.uniqueElement(AbstractQueryImpl.java:918) ~[hibernate-core-4.2.7.SP1.jar:4.2.7.SP1]
at org.hibernate.internal.CriteriaImpl.uniqueResult(CriteriaImpl.java:396) ~[hibernate-core-4.2.7.SP1.jar:4.2.7.SP1]
at com.atlassian.crowd.dao.membership.MembershipDAOHibernate.findInternalMembership(MembershipDAOHibernate.java:356) ~[crowd-persistence-hibernate4-2.7.1-rc.jar:na]
at com.atlassian.crowd.dao.membership.MembershipDAOHibernate.isUserDirectMember(MembershipDAOHibernate.java:211) ~[crowd-persistence-hibernate4-2.7.1-rc.jar:na]
at com.sun.proxy.$Proxy109.isUserDirectMember(Unknown Source) ~[na:na]
at com.atlassian.crowd.directory.AbstractInternalDirectory.isUserDirectGroupMember(AbstractInternalDirectory.java:804) ~[crowd-persistence-2.7.1-rc.jar:na]
at com.atlassian.crowd.directory.AbstractInternalDirectory.removeUserFromGroup(AbstractInternalDirectory.java:852) ~[crowd-persistence-2.7.1-rc.jar:na]
at com.atlassian.crowd.directory.DbCachingRemoteChangeOperations.removeUserMembershipsForGroup(DbCachingRemoteChangeOperations.java:750) ~[crowd-core-2.7.1-rc.jar:na]
at com.atlassian.crowd.directory.$Proxy1480.removeUserMembershipsForGroup(Unknown Source) ~[na:na]
at com.atlassian.crowd.directory.DirectoryCacheImplUsingChangeOperations.syncUserMembersForGroup(DirectoryCacheImplUsingChangeOperations.java:119) ~[crowd-core-2.7.1-rc.jar:na]
at com.atlassian.crowd.directory.ldap.cache.AbstractCacheRefresher.synchroniseMemberships(AbstractCacheRefresher.java:142) ~[crowd-ldap-2.7.1-rc.jar:na]
at com.atlassian.crowd.directory.ldap.cache.AbstractCacheRefresher.synchroniseAll(AbstractCacheRefresher.java:82) ~[crowd-ldap-2.7.1-rc.jar:na]
at com.atlassian.crowd.directory.ldap.cache.UsnChangedCacheRefresher.synchroniseAll(UsnChangedCacheRefresher.java:126) ~[crowd-ldap-2.7.1-rc.jar:na]
at com.atlassian.crowd.directory.DbCachingRemoteDirectory.synchroniseCache(DbCachingRemoteDirectory.java:998) ~[crowd-core-2.7.1-rc.jar:na]
at com.atlassian.crowd.manager.directory.DirectorySynchroniserImpl.synchronise(DirectorySynchroniserImpl.java:75) ~[crowd-core-2.7.1-rc.jar:na]
at com.sun.proxy.$Proxy117.synchronise(Unknown Source) ~[na:na]
at com.atlassian.crowd.directory.DbCachingDirectoryPoller.pollChanges(DbCachingDirectoryPoller.java:50) ~[crowd-core-2.7.1-rc.jar:na]
at com.atlassian.crowd.manager.directory.monitor.poller.DirectoryPollerJobBean.executeInternal(DirectoryPollerJobBean.java:29) [crowd-core-2.7.1-rc.jar:na]
at org.springframework.scheduling.quartz.QuartzJobBean.execute(QuartzJobBean.java:113) [spring-context-support-3.2.5.RELEASE.jar:3.2.5.RELEASE]
at org.quartz.core.JobRunShell.run(JobRunShell.java:223) [quartz-1.8.6.jar:na]
at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:549) [quartz-1.8.6.jar:na]
... 36 frames trimmed

[Pierre Zurmely · Accepted solution]

Hello,

Ticket: <font></font><font>https://support.atlassian.com/i#browse/SSP-3493</font> u is fixed now.

It was an issue related to a wrong parameter in the server.xml file.

Here: <Context docBase="${catalina.home}/atlassian-stash" path="" reloadable="false" useHttpOnly="true" />

My path value was wrong, so the service was available, but not at the expected place.

Pierre

[Pierre Zurmely]

Hello Charles,

Thank you for your supportive comment.

I have raised the ticket: https://support.atlassian.com/i#browse/SSP-3493using the Stash Request tool and providing all the logs.

I am using an external database, MySQL Server version: 5.1.56.

Regards,

Pierre

[cofarrell]

Hi Pierre,

I'm sorry to hear that. Just out of interest, are you still using the "internal" database of Stash?

In any case did you mind raising a support ticket and attaching your logs and ideally the full support zip (which you can collect from the Stash UI)

Charles