You can enable Stash debug logging to see extra debug info, including the actual commands being invoked on the underlying repository. That said, while conflicts are a natural part of git workflow, you shouldn't be seeing an error message when they occur. I'd advise creating a support request at https://support.atlassian.com and we can help you out. If you can isolate the error in the debug log first it'll be a big help to us diagnosing your problem.
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