I am having a similar problem, but no passphrase is being asked for:
$ ssh -i elasticbamboo.pk ec2-user@ec2-54-234-XXX-XXX.compute-1.amazonaws.com The authenticity of host 'ec2-54-234-78-100.compute-1.amazonaws.com (54.234.XXX.XXX)' can't be established. RSA key fingerprint is a3:37:bf:ac:fc:e3:28:8e:34:75:53:f5:e2:5a:de:f7. Are you sure you want to continue connecting (yes/no)? yes Warning: Permanently added 'ec2-54-234-XXX-XXX.compute-1.amazonaws.com,54.234.XXX.XXX' (RSA) to the list of known hosts. Permission denied (publickey).
I was refering to Bamboo Admin -> Elastic Bamboo -> Configuration -> AWS Credentials Management
I uploaded both X509 files but that didn't change anything.
I've also tried to ssh with ec2-user, root and bamboo users, but I always get the same error:
$ ssh -i elasticbamboo.pk email@example.com Permission denied (publickey).
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