Bamboo won't build after a new commit

I have upgraded Bamboo and Bitbucket from 3.9.1 and 3.8.0 (Stash) to 3.13.0.1 and 4.9.1 respectively.  Then set up application links and a build projct and plan.  It happily builds (with errors due to the build file) until I commit a change.  Then the build won't start.  Bamboo displays the error:

System Error Details
Build Pulse - wmi 17 : Errors getting changes for PUL-WMI-17 
(org.springframework.orm.hibernate4.HibernateJdbcException : JDBC exception on Hibernate data access: SQLException for SQL [insert into COMMIT_FILES (COMMIT_ID, COMMIT_FILE_NAME, COMMIT_FILE_REIVISION) values (?, ?, ?)]; SQL state [HY000]; error code [1364]; could not execute batch; nested exception is org.hibernate.exception.GenericJDBCException: could not execute batch)

 
org.springframework.orm.hibernate4.HibernateJdbcException: JDBC exception on Hibernate data access: SQLException for SQL [insert into COMMIT_FILES (COMMIT_ID, COMMIT_FILE_NAME, COMMIT_FILE_REIVISION) values (?, ?, ?)]; SQL state [HY000]; error code [1364]; could not execute batch; nested exception is org.hibernate.exception.GenericJDBCException: could not execute batch
	at org.springframework.orm.hibernate4.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:168)
	at org.springframework.orm.hibernate4.HibernateTransactionManager.convertHibernateAccessException(HibernateTransactionManager.java:685)
	at org.springframework.orm.hibernate4.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:567)
	at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:757)
	at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:726)
	at sun.reflect.GeneratedMethodAccessor146.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:201)
	at com.sun.proxy.$Proxy32.commit(Unknown Source)
	at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:478)
	at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:272)
	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:95)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
	at com.sun.proxy.$Proxy70.updateResultSummaryWithBuildChanges(Unknown Source)
	at com.atlassian.bamboo.chains.ChainExecutionManagerImpl$1.getChainState(ChainExecutionManagerImpl.java:249)
	at com.atlassian.bamboo.chains.ChainExecutionManagerImpl.tryStartChainState(ChainExecutionManagerImpl.java:330)
	at com.atlassian.bamboo.chains.ChainExecutionManagerImpl.delayedStart(ChainExecutionManagerImpl.java:228)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
	at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
	at com.sun.proxy.$Proxy133.delayedStart(Unknown Source)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:201)
	at com.sun.proxy.$Proxy133.delayedStart(Unknown Source)
	at com.atlassian.bamboo.plan.PlanExecutionManagerImpl$1$1$1.lambda$call$47(PlanExecutionManagerImpl.java:414)
	at com.atlassian.bamboo.util.CacheAwareness$3.call(CacheAwareness.java:159)
	at com.atlassian.bamboo.util.CacheAwareness$3.call(CacheAwareness.java:155)
	at com.atlassian.bamboo.util.CacheAwareness.withValuesOlderThanTimestampReloaded(CacheAwareness.java:188)
	at com.atlassian.bamboo.util.CacheAwareness.withValuesOlderThanTimestampReloaded(CacheAwareness.java:154)
	at com.atlassian.bamboo.util.CacheAwareness.withValuesOlderThanTimestampReloaded(CacheAwareness.java:219)
	at com.atlassian.bamboo.plan.PlanExecutionManagerImpl$1$1$1.call(PlanExecutionManagerImpl.java:413)
	at com.atlassian.bamboo.plan.PlanExecutionManagerImpl$1$1$1.call(PlanExecutionManagerImpl.java:404)
	at io.atlassian.util.concurrent.ManagedLocks$ManagedLockImpl.withLock(ManagedLocks.java:293)
	at com.atlassian.bamboo.plan.PlanExecutionLockServiceImpl.lock(PlanExecutionLockServiceImpl.java:85)
	at com.atlassian.bamboo.plan.PlanExecutionManagerImpl.doWithProcessLock(PlanExecutionManagerImpl.java:784)
	at com.atlassian.bamboo.plan.PlanExecutionManagerImpl.access$400(PlanExecutionManagerImpl.java:130)
	at com.atlassian.bamboo.plan.PlanExecutionManagerImpl$1$1.run(PlanExecutionManagerImpl.java:398)
	at com.atlassian.bamboo.utils.BambooRunnables$1.run(BambooRunnables.java:51)
	at com.atlassian.bamboo.security.ImpersonationHelper.runWith(ImpersonationHelper.java:31)
	at com.atlassian.bamboo.security.ImpersonationHelper.runWithSystemAuthority(ImpersonationHelper.java:20)
	at com.atlassian.bamboo.security.ImpersonationHelper$1.run(ImpersonationHelper.java:52)
	at java.lang.Thread.run(Thread.java:745)
Caused by: org.hibernate.exception.GenericJDBCException: could not execute batch
	at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:54)
	at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:124)
	at org.hibernate.engine.jdbc.batch.internal.BatchingBatch.performExecution(BatchingBatch.java:122)
	at org.hibernate.engine.jdbc.batch.internal.BatchingBatch.doExecuteBatch(BatchingBatch.java:101)
	at org.hibernate.engine.jdbc.batch.internal.AbstractBatchImpl.execute(AbstractBatchImpl.java:161)
	at org.hibernate.engine.jdbc.internal.JdbcCoordinatorImpl.getBatch(JdbcCoordinatorImpl.java:196)
	at org.hibernate.persister.collection.AbstractCollectionPersister.recreate(AbstractCollectionPersister.java:1230)
	at org.hibernate.persister.collection.OneToManyPersister.recreate(OneToManyPersister.java:183)
	at org.hibernate.action.internal.CollectionRecreateAction.execute(CollectionRecreateAction.java:58)
	at org.hibernate.engine.spi.ActionQueue.execute(ActionQueue.java:395)
	at org.hibernate.engine.spi.ActionQueue.executeActions(ActionQueue.java:387)
	at org.hibernate.engine.spi.ActionQueue.executeActions(ActionQueue.java:309)
	at org.hibernate.event.internal.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:349)
	at org.hibernate.event.internal.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:56)
	at org.hibernate.internal.SessionImpl.flush(SessionImpl.java:1195)
	at org.hibernate.internal.SessionImpl.managedFlush(SessionImpl.java:404)
	at org.hibernate.engine.transaction.internal.jdbc.JdbcTransaction.beforeTransactionCommit(JdbcTransaction.java:101)
	at org.hibernate.engine.transaction.spi.AbstractTransactionImpl.commit(AbstractTransactionImpl.java:175)
	at org.springframework.orm.hibernate4.HibernateTransactionManager.doCommit(HibernateTransactionManager.java:559)
	... 53 more
Caused by: java.sql.BatchUpdateException: Field 'LIST_POSITION' doesn't have a default value
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
	at com.mysql.jdbc.Util.handleNewInstance(Util.java:404)
	at com.mysql.jdbc.Util.getInstance(Util.java:387)
	at com.mysql.jdbc.SQLError.createBatchUpdateException(SQLError.java:1161)
	at com.mysql.jdbc.PreparedStatement.executeBatchSerially(PreparedStatement.java:1773)
	at com.mysql.jdbc.PreparedStatement.executeBatchInternal(PreparedStatement.java:1257)
	at com.mysql.jdbc.StatementImpl.executeBatch(StatementImpl.java:958)
	at com.mchange.v2.c3p0.impl.NewProxyPreparedStatement.executeBatch(NewProxyPreparedStatement.java:2544)
	at org.hibernate.engine.jdbc.batch.internal.BatchingBatch.performExecution(BatchingBatch.java:113)
	... 69 more
Caused by: java.sql.SQLException: Field 'LIST_POSITION' doesn't have a default value
	at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:963)
	at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3966)
	at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3902)
	at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2526)
	at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2673)
	at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2549)
	at com.mysql.jdbc.PreparedStatement.executeInternal(PreparedStatement.java:1861)
	at com.mysql.jdbc.PreparedStatement.executeUpdateInternal(PreparedStatement.java:2073)
	at com.mysql.jdbc.PreparedStatement.executeBatchSerially(PreparedStatement.java:1751)
	... 73 more
I can't find any solutions on the net.  Does anyone have any ideas?

1 answer

This widget could not be displayed.

During upgrade Bamboo should drop column COMMIT_FILES.LIST_POSITION, there should be logs during upgrade:

[INFO] Dropping primary key on COMMIT_FILES
[INFO] The primary key constraint on COMMIT_FILES has been dropped.

In case of any problems there should be ERROR or WARN log messages which doesn't prevent Bamboo from upgrade continue. 

Please check logs for any WARN and ERRORS and if it's the only warning, drop this column manually

I'm just getting to look at this now.  I tried dropping the field, but it won't let me as it is part of the primary key.

I'll look into changing that.

But this leads me to wonder, if this part of the upgrade didn't occur, what else didn't.

Is it possible to force the upgrade scripts to run again?

What other course of action can I take?

Thanks,

David

I tried

mysql> alter table `commit_files` drop primary key, add primary key(`COMMIT_ID`);

but got the error

ERROR 1062 (23000): Duplicate entry '3047425' for key 'PRIMARY'

There are 23 rows in the table, but only 2 distinct commit_ids.  Can I truncate the table, or will that cause other issues?

Suggest an answer

Log in or Sign up to answer
Atlassian Summit 2018

Meet the community IRL

Atlassian Summit is an excellent opportunity for in-person support, training, and networking.

Learn more
Community showcase
Posted yesterday in New to Jira

Are you planning to trial, or are currently trialling Jira Software? - We want to talk to you!

Hello! I'm Rayen, a product manager at Atlassian. My team and I are working hard to improve the trial experience for Jira Software Cloud. We are interested in   talking to 20 people planning t...

54 views 1 0
Join discussion

Atlassian User Groups

Connect with like-minded Atlassian users at free events near you!

Find a group

Connect with like-minded Atlassian users at free events near you!

Find my local user group

Unfortunately there are no AUG chapters near you at the moment.

Start an AUG

You're one step closer to meeting fellow Atlassian users at your local meet up. Learn more about AUGs

Groups near you